PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g039886m

Common Name

CISIN_1g039886mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

NAC

Protein Properties

Length: 192aa MW: 22276.7 Da PI: 8.0518

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g039886m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	96.8	3.4e-30	7	81	53	128
NAM 53 aeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++eke yfF++rd+ky++g+r+nra+ +gyWkatg dk++++ +g++vg kktLvfy+g+ pkg kt W+mheyr+ orange1.1g039886m 7 EKEKEFYFFTPRDRKYKNGTRPNRAAGEGYWKATGADKSIKH-NGAVVGFKKTLVFYEGKPPKGDKTFWIMHEYRV 81 568899**********************************.999**************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	38.879	1	110	IPR003441	NAC domain
SuperFamily	SSF101941	3.01E-37	6	110	IPR003441	NAC domain
Pfam	PF02365	1.2E-13	12	81	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MYKGCAEKEK EFYFFTPRDR KYKNGTRPNR AAGEGYWKAT GADKSIKHNG AVVGFKKTLV 60 FYEGKPPKGD KTFWIMHEYR VNNDSPPSTR TRLSTDMRLD DWVLCRIYYK ERSDKSLKSL 120 HRTEDRASTE ETNEPDCDKG SAVDFSGYAD TYSGYMQHLW QQQNAFSQIP SFKDVSFDSI 180 VNLDEPFQHD GT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	2e-39	9	113	70	168	NO APICAL MERISTEM PROTEIN
1ut4_B	2e-39	9	113	70	168	NO APICAL MERISTEM PROTEIN
1ut7_A	2e-39	9	113	70	168	NO APICAL MERISTEM PROTEIN
1ut7_B	2e-39	9	113	70	168	NO APICAL MERISTEM PROTEIN
4dul_A	2e-39	9	113	70	168	NAC domain-containing protein 19
4dul_B	2e-39	9	113	70	168	NAC domain-containing protein 19
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Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269\|PubMed:29760199}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence (developmental, light-induced and ABA-induced senescence) and regulates fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. Activates the expression of senescence and ABA associated genes including NCED1, ABCG40, CYP707A2, SAG113, SGR1 and PAO, by directly binding to their promoters. {ECO:0000269\|PubMed:29760199}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. Induced by abscisic acid (ABA). {ECO:0000269\|PubMed:29760199}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006446143.1	1e-143	NAC transcription factor 29
Refseq	XP_015383322.1	1e-143	NAC transcription factor 29-like
Swissprot	K4BNG7	1e-42	NAP2_SOLLC; NAC domain-containing protein 2
TrEMBL	A0A067F1I4	1e-143	A0A067F1I4_CITSI; Uncharacterized protein (Fragment)
TrEMBL	A0A2H5P417	1e-142	A0A2H5P417_CITUN; Uncharacterized protein
TrEMBL	V4TG88	1e-142	V4TG88_9ROSI; Uncharacterized protein
STRING	XP_006446143.1	1e-142	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17542	3	10

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69490.1	1e-41	NAC-like, activated by AP3/PI

Link Out ? help Back to Top
Phytozome	orange1.1g039886m

Publications ? help Back to Top
Tomato Genome Consortium The tomato genome sequence provides insights into fleshy fruit evolution. Nature, 2012. 485(7400): p. 635-41 [PMID:22660326] Ma X, et al. The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato. Plant Physiol., 2018. 177(3): p. 1286-1302 [PMID:29760199]