PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g039664m | ||||||||
Common Name | CISIN_1g039664mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | B3 | ||||||||
Protein Properties | Length: 214aa MW: 24692.2 Da PI: 10.1018 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 58.7 | 1e-18 | 130 | 213 | 1 | 90 |
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v + +l lp++f++++ +k + ++++lede+gr++e +i +kk+ l++GW+ F+ ++L++gD +vF+l+++++f orange1.1g039664m 130 FIKSMVRSHVYSCFWLGLPNQFCKQNL-PK-TVTEMVLEDENGREFEAVYIGQKKG----LSGGWRAFALHHKLDDGDALVFELVEQKRF 213 89*********************9994.33.3459***************655555....9**********************9987766 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 2.9E-19 | 121 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-20 | 123 | 213 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 8.18E-23 | 128 | 214 | No hit | No description |
Pfam | PF02362 | 4.9E-17 | 130 | 213 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.266 | 130 | 214 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.6E-15 | 130 | 214 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MAKTNTYEEA RKKRLEENSQ RLQELGIEKI SKTLSQLSKS VKKSPQAQRH LPKFKSESVI 60 SIVEPRRSSR ARNSVVSYRD DLDIDLHPLR KSYLARPLEE VKMASYEERA RALKSAEQLQ 120 SSLQSGYPSF IKSMVRSHVY SCFWLGLPNQ FCKQNLPKTV TEMVLEDENG REFEAVYIGQ 180 KKGLSGGWRA FALHHKLDDG DALVFELVEQ KRFK |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432042.2 | 1e-131 | putative B3 domain-containing protein At5g58280 | ||||
Refseq | XP_015384133.1 | 1e-131 | putative B3 domain-containing protein At5g58280 isoform X1 | ||||
Refseq | XP_024950699.1 | 1e-131 | putative B3 domain-containing protein At5g58280 isoform X1 | ||||
Swissprot | Q5KQI4 | 1e-63 | Y5814_ORYSJ; B3 domain-containing protein Os05g0481400 | ||||
Swissprot | Q9FHB2 | 1e-63 | Y5828_ARATH; Putative B3 domain-containing protein At5g58280 | ||||
TrEMBL | A0A067EVH8 | 1e-156 | A0A067EVH8_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006464978.1 | 1e-145 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16141 | 12 | 14 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G58280.1 | 1e-57 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g039664m |
Publications ? help Back to Top | |||
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