PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039549m
Common NameCISIN_1g039549mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 325aa    MW: 36962.1 Da    PI: 8.8814
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039549mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.72e-05161180120
                        EEETTTTEEESSHHHHHHHH CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                        + C++C+k+F+r  n++ H+
  orange1.1g039549m 161 FACSICSKTFNRYNNMQMHM 180
                        78*****************9 PP
2zf-C2H216.13.1e-05245267123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C +Cgk+F  k + ++H +++
  orange1.1g039549m 245 FMCRKCGKTFAVKGDWRTHEKNC 267
                        89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.02E-5147184No hitNo description
PfamPF139122.3E-4161180IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.741161188IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-5161180IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.17161183IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280163183IPR007087Zinc finger, C2H2
SMARTSM00355240208240IPR015880Zinc finger, C2H2-like
SuperFamilySSF576673.08E-6230265No hitNo description
Gene3DG3DSA:3.30.160.607.6E-6241265IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.704245265IPR007087Zinc finger, C2H2
SMARTSM0035535245265IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
FQSPTFIEWL KPSSSSSSSS SYSSYVTQQA QLTNPMMTIL KFPPVYQQQK QQQQPENLDE  60
GVRCLPLLSR FKEKKALKEE EEDMQVQETN LGVKQEKIEK VTVALHIGLP NTGDSDAESK  120
DFDTKQEEMI SRKSFHGCSL NKDSRFWIPT PAQILVGPMQ FACSICSKTF NRYNNMQMHM  180
WGHGSEYRKG PDSLKGTQPA AMLRLPCYCC AQGCKNNINH PRAKPLKDFR TLQTHFKRKH  240
GAKPFMCRKC GKTFAVKGDW RTHEKNCGKL WYCTCGSDFK HKRSLKDHIR SFGKGHSPHP  300
SLDGFEDEKE CVTTGSEDEV ARSC*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006487965.10.0zinc finger protein WIP3
SwissprotQ9SGD11e-126ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBLA0A067F4B80.0A0A067F4B8_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006487965.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08290.11e-122WIP domain protein 3
Publications ? help Back to Top
  1. Zhou X,Meier I
    Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins.
    Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5
    [PMID:25074908]