PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g039532m | ||||||||
Common Name | CISIN_1g039532mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 269aa MW: 30470.6 Da PI: 6.7994 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 141.7 | 4.3e-44 | 6 | 139 | 2 | 127 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 ppGfrF Pt+eelv++yL++k++g++ l+++++i+ ++iy+++PwdLp+ ++ + ++w+fF++r++++a+g r+nr t++gyWka orange1.1g039532m 6 PPGFRFYPTEEELVSFYLHNKLAGHRqdlnLQMDRIIPVINIYDYNPWDLPQfsqlLCHRDPEQWFFFIPRQESEARGGRPNRLTSAGYWKA 97 9***********************998887788789**************9646553344677***************************** PP NAM 86 tgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyr 127 tg+ v+s++++ vg k+t+vfy+grap+g+kt+W m+ey+ orange1.1g039532m 98 TGSPGLVYSSNNRPVGEKRTMVFYRGRAPNGRKTEWKMNEYK 139 *****************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.75E-48 | 4 | 169 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 48.53 | 5 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.0E-22 | 6 | 139 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 269 aa Download sequence Send to blast |
MVDDYPPGFR FYPTEEELVS FYLHNKLAGH RQDLNLQMDR IIPVINIYDY NPWDLPQFSQ 60 LLCHRDPEQW FFFIPRQESE ARGGRPNRLT SAGYWKATGS PGLVYSSNNR PVGEKRTMVF 120 YRGRAPNGRK TEWKMNEYKA IDAEASTSSS SATPPPVRHE FSLCRVYKKS KSLRAFDRRP 180 PPGPGATSIG EPREVPQRAD DHRGENIHNI QMAAPERTSS PDSSSSGDDG SQPPQVGGSS 240 NSAATTATAS NNEAWWDWEW DQLDNWKF* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 1e-36 | 6 | 172 | 18 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 1e-36 | 6 | 172 | 18 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 1e-36 | 6 | 172 | 18 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 1e-36 | 6 | 172 | 18 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 1e-36 | 6 | 172 | 21 | 171 | NAC domain-containing protein 19 |
3swm_B | 1e-36 | 6 | 172 | 21 | 171 | NAC domain-containing protein 19 |
3swm_C | 1e-36 | 6 | 172 | 21 | 171 | NAC domain-containing protein 19 |
3swm_D | 1e-36 | 6 | 172 | 21 | 171 | NAC domain-containing protein 19 |
3swp_A | 1e-36 | 6 | 172 | 21 | 171 | NAC domain-containing protein 19 |
3swp_B | 1e-36 | 6 | 172 | 21 | 171 | NAC domain-containing protein 19 |
3swp_C | 1e-36 | 6 | 172 | 21 | 171 | NAC domain-containing protein 19 |
3swp_D | 1e-36 | 6 | 172 | 21 | 171 | NAC domain-containing protein 19 |
4dul_A | 1e-36 | 6 | 172 | 18 | 168 | NAC domain-containing protein 19 |
4dul_B | 1e-36 | 6 | 172 | 18 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430144.1 | 0.0 | NAC domain-containing protein 90 | ||||
Swissprot | Q9FMR3 | 2e-72 | NAC90_ARATH; NAC domain-containing protein 90 | ||||
TrEMBL | A0A067FWE8 | 0.0 | A0A067FWE8_CITSI; Uncharacterized protein | ||||
TrEMBL | V4UUN7 | 0.0 | V4UUN7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006430144.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10159 | 10 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G22380.1 | 4e-71 | NAC domain containing protein 90 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g039532m |
Publications ? help Back to Top | |||
---|---|---|---|
|