PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039100m
Common NameCISIN_1g039100mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 387aa    MW: 43313.3 Da    PI: 7.4116
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039100mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B343.65.3e-14143241289
                        EEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE...EEETTEEEE-.........TTHHHHHHHHT--TT-EE CS
                 B3   2 fkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliy.rkksgryvlt.........kGWkeFvkangLkegDfv 80 
                        +k+l++sdv+++gr++lpk+ aee+  +++ +e++ ++++d  s + W++k++y +++++r+ ++         + + +Fvk+ngL+ gD++
  orange1.1g039100m 143 QKALKNSDVGSLGRIILPKREAEENlpSLSDKEGIHIVIRDvYSDKHWTLKFKYwSNNKSRIQFSssvstfsrfRYTVDFVKQNGLEIGDSL 234
                        799************************666678999*****8888*******996455555555556777888889999************* PP

                        EEEE-SSSE CS
                 B3  81 vFkldgrse 89 
                        +++ d  ++
  orange1.1g039100m 235 TLYED--ES 241
                        **933..33 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.3E-19138243IPR015300DNA-binding pseudobarrel domain
CDDcd100173.18E-16141242No hitNo description
SuperFamilySSF1019366.28E-15142243IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.2E-10142254IPR003340B3 DNA binding domain
PROSITE profilePS508639.418142254IPR003340B3 DNA binding domain
PfamPF023627.4E-11143242IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010262Biological Processsomatic embryogenesis
GO:0010344Biological Processseed oilbody biogenesis
GO:0010431Biological Processseed maturation
GO:0010601Biological Processpositive regulation of auxin biosynthetic process
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MQFPSTFPLD QSGGQSFAVA AAAPYPVYPF WLAQNGIQNG GGNNAIPAAA GSWSLQPNIR  60
VPKEPQRVVL DPQKTKIARI KRKLARQKSL SLQRNASSGA SSSNVPSSAH FDATRLPTYG  120
VDTHRDLFNF CTPDNKRLRV LLQKALKNSD VGSLGRIILP KREAEENLPS LSDKEGIHIV  180
IRDVYSDKHW TLKFKYWSNN KSRIQFSSSV STFSRFRYTV DFVKQNGLEI GDSLTLYEDE  240
SKNLGQYFSV KKVERPEPAA EPSYKQQNYD FFPAANQTPT PIMHQARDEE EASLALLIEQ  300
LRHKEQQETY YNLMTLPLDD HEEANNVVRA SNNATSSGIH AHLAATSSSS HGAKMNNPEY  360
DHHQTVDDCY SCLDMLPDVD TYNFSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9c_A4e-411322503110B3 domain-containing transcription factor LEC2
6j9c_D4e-411322503110B3 domain-containing transcription factor LEC2
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00032PBMTransfer from AT1G28300Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024046749.10.0B3 domain-containing transcription factor LEC2
TrEMBLA0A067GQL60.0A0A067GQL6_CITSI; Uncharacterized protein
STRINGXP_006449368.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM92622336
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28300.13e-44B3 family protein