PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038961m
Common NameCISIN_1g038961mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 458aa    MW: 50550 Da    PI: 8.1875
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038961mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.00068371393123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++Cp+C k+F++   L  H r+H
  orange1.1g038961m 371 HECPICLKVFPSGQALGGHKRSH 393
                        79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.31E-5329No hitNo description
PfamPF139121.9E-6629IPR007087Zinc finger, C2H2
PROSITE profilePS501579.307628IPR007087Zinc finger, C2H2
SMARTSM003550.15628IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SuperFamilySSF576671.17E-6284306No hitNo description
PfamPF139121.9E-10284308IPR007087Zinc finger, C2H2
PROSITE profilePS501579.723284311IPR007087Zinc finger, C2H2
SMARTSM003550.65284306IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280286306IPR007087Zinc finger, C2H2
SuperFamilySSF576671.17E-6366393No hitNo description
PfamPF139125.0E-13371393IPR007087Zinc finger, C2H2
PROSITE profilePS501578.995371393IPR007087Zinc finger, C2H2
SMARTSM003550.071371393IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280373393IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 458 aa     Download sequence    Send to blast
DREFKHVCKF CSKSFPCGRS LGGHMRSHMI TVTETTDGHH KQLAKKKLPS VNNTETNGYG  60
LRENPKKSKR IADSSENNSS QQQQQLCGKG FVSWKPMKCN SEKDRVSNNN TSLEDQDSLT  120
SANQKLVTDS QSDNETAAPN RKRRSKRRTR YMATPTANSC SISVANNKNN GSSSVSEIEQ  180
EQEEVAMCLM MLSRDVGSRG ILNSVAESSD NNSLDSEKAK VIKNLKKDTE LDQAELGSSK  240
QNSTSKKNVC NSFDPELRSD SLKRSTTDAS DAEFYKDSQK RSKFECATCN KIFHSYQALG  300
GHRASHKKIK GCFATKIDSS ENSIEAEHSP DPTADSKLIK SINNENSADH FFVADCDDHR  360
AETSCGAKKK HECPICLKVF PSGQALGGHK RSHLLGGNEA RNSPAIVLEN PIPEIRNFLD  420
LNLPAPDEED SNAHLGLQQW WISSSHKHEA LVSLISN*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1259264DSLKRS
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.13240.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006440700.10.0zinc finger protein ZAT4
TrEMBLA0A067EHM60.0A0A067EHM6_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006440700.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16472912
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G26610.11e-41C2H2-like zinc finger protein