PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g038876m | ||||||||
Common Name | CISIN_1g038876mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 127aa MW: 14757.7 Da PI: 9.3524 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 68.2 | 2.3e-21 | 8 | 124 | 1 | 109 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk..sgyWka 85 lp Gf+F+P+deel+ +yLkkk +g ++l+e i+++++y+ +P+++ + + ++++yfF++ +kk ++g+r r++ g+W+ orange1.1g038876m 8 LPHGFQFRPSDEELIEHYLKKKDSGIFIPLAEYfIRDCNLYQEKPSEIWDshggPFLNADEDLYFFTHLKKKFSKGSRIDRKVGssGGTWQG 99 699************************9998888**************632455333478899******************75544899*** PP NAM 86 tgkdkevlsk.kgelvglkktLvfy 109 k+++s ++ ++g kk + + orange1.1g038876m 100 EDAGKDIVSGqSKIKIGSKKRFRYE 124 *******997455679****99986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-23 | 5 | 125 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.212 | 8 | 127 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.8E-14 | 9 | 124 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MQEHRPFLPH GFQFRPSDEE LIEHYLKKKD SGIFIPLAEY FIRDCNLYQE KPSEIWDSHG 60 GPFLNADEDL YFFTHLKKKF SKGSRIDRKV GSSGGTWQGE DAGKDIVSGQ SKIKIGSKKR 120 FRYEKQG |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006437281.2 | 2e-86 | NAC domain-containing protein 83 | ||||
TrEMBL | A0A067D458 | 4e-88 | A0A067D458_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006437282.1 | 3e-84 | (Citrus clementina) | ||||
STRING | XP_006437303.1 | 9e-84 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13879 | 3 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G03200.1 | 8e-15 | NAC domain containing protein 45 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g038876m |