PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038538m
Common NameCISIN_1g038538mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 244aa    MW: 26852.6 Da    PI: 4.5489
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038538mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.12.2e-1863113155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        + y+GVr ++ +g+Wv+eIr+p++   + r++lg+f t+e+Aa+a++ a+++++g
  orange1.1g038538m  63 PVYRGVRMRS-WGKWVSEIREPRK---KSRIWLGTFRTPEMAARAHDVAALSIKG 113
                        68*****998.**********843...6**********************99876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008472.5E-1263113IPR001471AP2/ERF domain
PROSITE profilePS5103222.93264121IPR001471AP2/ERF domain
SMARTSM003801.3E-3664127IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-2164122IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.109.9E-3264122IPR001471AP2/ERF domain
PRINTSPR003673.2E-106576IPR001471AP2/ERF domain
CDDcd000186.82E-3265123No hitNo description
PRINTSPR003673.2E-1087103IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 244 aa     Download sequence    Send to blast
MASSSELSNI SSEEAESTST NSSTNDSLSQ QRSRSDTGCR SENHPGSSRP KRKRESESGT  60
KHPVYRGVRM RSWGKWVSEI REPRKKSRIW LGTFRTPEMA ARAHDVAALS IKGDSAVLNF  120
PELVEVLPRP VSLLPRDIQT AATKAASMII DPSSSTCDEV SAQPQQDEQA ELGEIVQLPN  180
IEGSFDFDSA ESHNELNIPI HDDLFDGWIY PPVVQDFVAE FPEHILAAES LIPGDFEASS  240
VWD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-1959121972Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006465666.11e-177ethylene-responsive transcription factor ERF036
RefseqXP_006495405.11e-177ethylene-responsive transcription factor ERF036-like
SwissprotQ9LYD32e-57DREB3_ARATH; Dehydration-responsive element-binding protein 3
TrEMBLA0A067F0G41e-177A0A067F0G4_CITSI; Uncharacterized protein
TrEMBLA0A2H5PFH91e-177A0A2H5PFH9_CITUN; Uncharacterized protein
STRINGXP_006465666.11e-177(Citrus sinensis)
STRINGXP_006495405.11e-177(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11590.12e-57ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Galuschka C,Schindler M,Bülow L,Hehl R
    AthaMap web tools for the analysis and identification of co-regulated genes.
    Nucleic Acids Res., 2007. 35(Database issue): p. D857-62
    [PMID:17148485]