PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038233m
Common NameCISIN_1g038233mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 332aa    MW: 36790.8 Da    PI: 7.9298
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038233mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.71.9e-1192131544
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNka 44 
                        k  rr+++NReAAr+sR+RKka++++Le    +L++  ++
  orange1.1g038233m  92 KTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLTQLEQE 131
                        7789************************876666665554 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1707.5E-986134No hitNo description
SMARTSM003387.1E-888172IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.28990134IPR004827Basic-leucine zipper domain
PfamPF001701.3E-892132IPR004827Basic-leucine zipper domain
CDDcd147083.27E-2392144No hitNo description
SuperFamilySSF579591.13E-792134No hitNo description
PROSITE patternPS00036095110IPR004827Basic-leucine zipper domain
PfamPF141441.6E-31181255IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MRPPTLNIFP SQPMHVEPSS TNNHKAATAL VSSTTNNSSK RPSEPSMELA NARNNAPSSG  60
PETAKAIKRE GNRKGPTSSN SEHEGPKTPD PKTLRRLAQN REAARKSRLR KKAYVQQLES  120
SRIKLTQLEQ ELQRARTQGM FFGGILGGEQ GLPVGISNIS SEAAVFDMEY ARWLEVHHRL  180
MCELRAAVQE HLPENELRLY VDNCLAHYDE IMNLKGMVAK TDVFHLVSGL WKSPAERCFL  240
WLGGFRPSEL IKVILSQIEP LTEQQILGIC GLQQSTQEAE DALSQGLEAL NQSILDTIAS  300
DSLSCPPNMA NYMGQMAVAM NKLSTLEGFV RQ
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Specifically expressed in roots. {ECO:0000269|PubMed:12777042}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to as1-like elements (5'-TGACGTAAgggaTGACGCA-3') in promoters of target genes. Regulates transcription in response to plant signaling molecules salicylic acid (SA), methyl jasmonate (MJ) and auxin (2,4D) only in leaves. Prevents lateral branching and may repress defense signaling. {ECO:0000269|PubMed:12777042}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00491DAPTransfer from AT5G06839Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006437046.10.0bZIP transcription factor TGA10 isoform X2
SwissprotQ52MZ20.0TGA10_TOBAC; bZIP transcription factor TGA10
TrEMBLA0A067ERL70.0A0A067ERL7_CITSI; Uncharacterized protein (Fragment)
TrEMBLV4TKH30.0V4TKH3_9ROSI; Uncharacterized protein
STRINGXP_006437046.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM72072843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-162bZIP family protein