PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g037709m
Common NameCISIN_1g037709mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 395aa    MW: 44566.4 Da    PI: 5.1961
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g037709mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM90.92.2e-2851353127
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkya....tgkrknratksgyWkatgk 88 
                         G+ F+P dee++ + Lkkk  +  +++ ++ike+d y+++PwdL   +++++ e+ wyfFsk + + a    +g++++r+tksg+Wk+tg+
  orange1.1g037709m   5 TGIGFRPLDEEII-DLLKKKRLDPGFTV-QTIKEIDFYSFDPWDLAgfSEFQSMEDVWYFFSKPKYRGAkrkrSGQQQHRKTKSGTWKKTGS 94 
                        699**********.99*******99999.88**************85448888889******976544423337999*************** PP

                NAM  89 dkevlsk.kgelvglkktLvfykg.rapkgektdWvmheyr 127
                          e+++k ++e++g k+ Lvf +   +++  +t+W+mhe +
  orange1.1g037709m  95 GSEMKRKnSTEVIGNKDYLVFIHDdATSEKANTKWLMHEIA 135
                        999999856778*********96625566679*******76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100534.1443154IPR003441NAC domain
SuperFamilySSF1019411.7E-295152IPR003441NAC domain
PfamPF023658.2E-156134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 395 aa     Download sequence    Send to blast
MDSLTGIGFR PLDEEIIDLL KKKRLDPGFT VQTIKEIDFY SFDPWDLAGF SEFQSMEDVW  60
YFFSKPKYRG AKRKRSGQQQ HRKTKSGTWK KTGSGSEMKR KNSTEVIGNK DYLVFIHDDA  120
TSEKANTKWL MHEIAIADDP LYKENFVVCR LEGKNCDKKL GVSTTDKHQS SQDFASSSSI  180
NVVEDISLES AQPPDRHLVS KTNQVVENIF LKNQLPPSEN LFSCNEDSAT TSLDSGLSPQ  240
NTSTGLQLVP HRVLESRRPP DEQRATYSID VVENSFKVEP RIPAEFNTHG SFNRLNNDCF  300
LALQSPTYLE QESSYSNGPS FGGDLLNSQF DSGQAIAFSE SQQLPNHLIS CSRNHVAENT  360
STGLQLVLHP VLESWRSPDE QRATYSIDVV ENSFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A7e-13615420165NO APICAL MERISTEM PROTEIN
1ut4_B7e-13615420165NO APICAL MERISTEM PROTEIN
1ut7_A7e-13615420165NO APICAL MERISTEM PROTEIN
1ut7_B7e-13615420165NO APICAL MERISTEM PROTEIN
3ulx_A7e-13615418168Stress-induced transcription factor NAC1
4dul_A7e-13615420165NAC domain-containing protein 19
4dul_B7e-13615420165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006485390.10.0uncharacterized protein LOC102625284 isoform X1
RefseqXP_015387902.10.0uncharacterized protein LOC102625284 isoform X2
RefseqXP_024041778.10.0uncharacterized protein LOC112098976
TrEMBLA0A067DSD30.0A0A067DSD3_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006485390.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13336429
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G02230.11e-18NAC domain containing protein 4