PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g037433m

Common Name

CISIN_1g037433mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 182aa MW: 20136.2 Da PI: 6.354

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g037433m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.1	0.00014	32	54	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C++ F++ L H++ H orange1.1g037433m 32 YECTFCKRGFTNAQALGGHMNIH 54 99*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	26	58	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.46E-7	29	58	No hit	No description
SMART	SM00355	0.0097	32	54	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	11.468	32	59	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	34	54	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 182 aa Download sequence Send to blast
MDSSQKQVGS DHSSSDENEV KELDTSSAKR SYECTFCKRG FTNAQALGGH MNIHRKDRAK 60 AKQTTGPSFI TSNPMLTHED YMNPRYIAPI SSDTSRHSPV FESQRNYLRY YQPSASNPGN 120 PPDYNVPRSE SLSMMNEDQL LGANLSLGIG PSCVGEDNEV MRRGTAEEAG LDLELRLGRN 180 R*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024948166.1	1e-134	zinc finger protein 11-like
TrEMBL	A0A067DVW7	1e-133	A0A067DVW7_CITSI; Uncharacterized protein
STRING	XP_006489610.1	1e-133	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9168	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43540.1	1e-15	C2H2 family protein

Link Out ? help Back to Top
Phytozome	orange1.1g037433m