PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g037309m | ||||||||
Common Name | CISIN_1g037309mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 287aa MW: 32950.1 Da PI: 9.5332 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 109 | 5.5e-34 | 1 | 123 | 5 | 127 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeek.ewyfFskrdkkyatgkrknr.atksgyWkatgkdkevls 94 +rF Pt +elv++yL++k+ +++l+ + i+e++iyk+ P +L +k+++e + +yfF++rd+ky++g+r++r + +g+Wka+gk +ev + orange1.1g037309m 1 YRFVPTCKELVTYYLRNKILERPLPP-SKIREANIYKHSPTELSEKYDKEGSgVMYFFTPRDRKYPEGERPKRsVDGNGFWKASGKAEEVEN 91 69*********************999.67**************977777666366******************6677*************99 PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyr 127 + l+ k++Lv+y+g+ +k++ktdW+m+e+ orange1.1g037309m 92 -FDILIAKKRSLVYYQGSYKKPKKTDWLMQEFF 123 .999***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.22E-40 | 1 | 152 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.7E-17 | 1 | 122 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 40.824 | 1 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
YRFVPTCKEL VTYYLRNKIL ERPLPPSKIR EANIYKHSPT ELSEKYDKEG SGVMYFFTPR 60 DRKYPEGERP KRSVDGNGFW KASGKAEEVE NFDILIAKKR SLVYYQGSYK KPKKTDWLMQ 120 EFFMTGSSSS SARKGRPHNM KLDDWVLCKV YKNKKRDKEE DGGHPVAFPN SSTVVGESSE 180 LPMMQKLNSN VPAQSLNLLH RSQAMHAISS QMSTYNNGQN GFQMPAAMLH SHEVQATSSQ 240 MPMYYNGQNF LLLNGGHEDT LWQQNNSHHH VDSKTNNQPE GIDMINN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-30 | 1 | 160 | 19 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006421412.2 | 0.0 | NAC domain-containing protein 67 | ||||
TrEMBL | A0A067EIJ9 | 0.0 | A0A067EIJ9_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006421412.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22823 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69490.1 | 2e-38 | NAC-like, activated by AP3/PI |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g037309m |