PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g037198m | ||||||||
Common Name | CISIN_1g037198mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 309aa MW: 35576.2 Da PI: 6.5115 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 61.7 | 2.4e-19 | 12 | 146 | 4 | 128 |
NAM 4 GfrFhPtdeelvveyLkkkvegkk...leleev.ikevdiykv.eP...wdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWka 85 +rF Pt++el+ +yL +k+++++ +++ +k++d+y+ eP wdL ++ + +yfF++ +k++++g+r n ++ W+ orange1.1g037198m 12 VLRFYPTEQELLEFYLLHKITQNHnlyQASDDIpVKDCDLYSPhEPnliWDLYGgdQL-MAGQALYFFTQLKKASPKGSRFNIKIGFDAWQG 102 58*******************9998863334556999***996256333344313322.345688******************999999*** PP NAM 86 tgkdkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 + k vl+ +++ g kk + + r++ ++ +W+mhe+++ orange1.1g037198m 103 EDRAKLVLAVgsEDQILGFKKRFRYE-SRENLEQNGRWIMHEFTI 146 9999999998667777********97.6777779*********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 5.23E-20 | 7 | 153 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 21.649 | 9 | 170 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.4E-14 | 11 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 309 aa Download sequence Send to blast |
MSPHVGLRFY PVLRFYPTEQ ELLEFYLLHK ITQNHNLYQA SDDIPVKDCD LYSPHEPNLI 60 WDLYGGDQLM AGQALYFFTQ LKKASPKGSR FNIKIGFDAW QGEDRAKLVL AVGSEDQILG 120 FKKRFRYESR ENLEQNGRWI MHEFTINAAL FGDQYSHKAR NFVLYCVKKN ELENPSEKAN 180 LGGKRSSGSK RKLKEVVTSS SHIDHDDEGF QSKRLKAHQN SVLIEQSHSP CSSSSLHTVE 240 HQGEIDNILE IVESEVGIDS LPNKLVFNIL VFYFKKNSRG EETEVYLREE SIVNEALIHH 300 YCEIFLML* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024949318.1 | 0.0 | NAC domain-containing protein 96-like | ||||
TrEMBL | A0A067DRR1 | 0.0 | A0A067DRR1_CITSI; Uncharacterized protein | ||||
STRING | XP_006492969.1 | 1e-139 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM19185 | 2 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G62380.1 | 2e-12 | NAC-domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g037198m |