PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g037028m

Common Name

CISIN_1g037028mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

GRAS

Protein Properties

Length: 504aa MW: 56374.8 Da PI: 6.9865

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g037028m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	369.8	3.6e-113	131	501	1	374
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetsekn.sseelaalklfsevsPil 91 lv++L++cAeav+ +d++ a+alL++l+ +a g+++qR+a++f+++L+ rla ++ + + s+++++ +se+ +l+l +e++P + orange1.1g037028m 131 LVQQLIACAEAVACRDKAHASALLSELRVNALVFGTSFQRVASCFVQGLSDRLALVQPLGAVGVVGSAAKSMAiTSERDESLSLVYEICPQI 222 689*************************************************95554444455555555556899999999***** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdis....qGlQWpaLlqaLasRpegpp.slRiTgvgspesgskeeleetgerLakfAeelgvpfef 178 +f+h++aN Ilea+ege+ vH++D++++ +G QW +L+q+L +R+++ p +l+iTgvg+ +e+l e+g+ L+++A+ l+++fef orange1.1g037028m 223 QFGHFVANASILEAFEGESLVHVVDLGMTlglpHGRQWHSLMQSLVNRSGKVPkRLKITGVGN----CSERLGEIGDELKRYADGLKLNFEF 310 *********************99873333678*********77666*****....9******************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfds 270 + v+k+le+l+ ++++v+ gE+l+ n++l+lh +++es + +vL+ + +lsPkvv +veq+++hn++ Fl rf+eal+yysa+fds orange1.1g037028m 311 LA-VEKSLETLQAKDINVEDGEVLVMNSILELHCVVKESRGALN---SVLQRLHQLSPKVVMLVEQDSSHNGPFFLGRFMEALHYYSAIFDS 398 .7******************************88877777...8**************************************** PP GRAS 271 leaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlg 361 l+a lp+ + +r+k+E++++++ei+n+v+ceg +r+erhe++ +Wr+r+++aGF++vp++ + +qak lrkv+ +gy++ ee+g+lvlg orange1.1g037028m 399 LDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQSVPIK--MLMQAKQWLRKVQtCEGYTIIEEKGCLVLG 488 ******************************************************96..789*********************** PP GRAS 362 WkdrpLvsvSaWr 374 Wk++p++++S+W+ orange1.1g037028m 489 WKSKPIIAASCWK 501 **********8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	57.037	105	482	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.2E-110	131	501	IPR005202	Transcription factor GRAS

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated

Sequence ? help Back to Top
Protein Sequence Length: 504 aa Download sequence Send to blast
MAPDFQWRHG LCLDDKDNEA MGLDLNYSAT ACYRCFNLST LANHSCTWST SDETRNHKRI 60 KKTSMIDESS GSSSRLCNSL NSLPRLQFRD HVWVYTQRYL AIEAMEEAAL AMMIDKDTEV 120 KEEGNGDGMK LVQQLIACAE AVACRDKAHA SALLSELRVN ALVFGTSFQR VASCFVQGLS 180 DRLALVQPLG AVGVVGSAAK SMAITSERDE SLSLVYEICP QIQFGHFVAN ASILEAFEGE 240 SLVHVVDLGM TLGLPHGRQW HSLMQSLVNR SGKVPKRLKI TGVGNCSERL GEIGDELKRY 300 ADGLKLNFEF LAVEKSLETL QAKDINVEDG EVLVMNSILE LHCVVKESRG ALNSVLQRLH 360 QLSPKVVMLV EQDSSHNGPF FLGRFMEALH YYSAIFDSLD AMLPKYDTKR AKIEQFYFAE 420 EIKNIVSCEG PARVERHERV DQWRRRMSRA GFQSVPIKML MQAKQWLRKV QTCEGYTIIE 480 EKGCLVLGWK SKPIIAASCW KCS*

Sequence ? help Back to Top

Protein Sequence Length: 504 aa Download sequence Send to blast

MAPDFQWRHG LCLDDKDNEA MGLDLNYSAT ACYRCFNLST LANHSCTWST SDETRNHKRI  60
KKTSMIDESS GSSSRLCNSL NSLPRLQFRD HVWVYTQRYL AIEAMEEAAL AMMIDKDTEV  120
KEEGNGDGMK LVQQLIACAE AVACRDKAHA SALLSELRVN ALVFGTSFQR VASCFVQGLS  180
DRLALVQPLG AVGVVGSAAK SMAITSERDE SLSLVYEICP QIQFGHFVAN ASILEAFEGE  240
SLVHVVDLGM TLGLPHGRQW HSLMQSLVNR SGKVPKRLKI TGVGNCSERL GEIGDELKRY  300
ADGLKLNFEF LAVEKSLETL QAKDINVEDG EVLVMNSILE LHCVVKESRG ALNSVLQRLH  360
QLSPKVVMLV EQDSSHNGPF FLGRFMEALH YYSAIFDSLD AMLPKYDTKR AKIEQFYFAE  420
EIKNIVSCEG PARVERHERV DQWRRRMSRA GFQSVPIKML MQAKQWLRKV QTCEGYTIIE  480
EKGCLVLGWK SKPIIAASCW KCS*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_A	3e-60	138	500	25	377	Protein SCARECROW
5b3h_D	3e-60	138	500	25	377	Protein SCARECROW
Search in ModeBase

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024042075.1	0.0	DELLA protein GAI1
TrEMBL	A0A067H3B1	0.0	A0A067H3B1_CITSI; Uncharacterized protein
STRING	XP_006484335.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM16018	8	14

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	9e-78	GRAS family protein

Link Out ? help Back to Top
Phytozome	orange1.1g037028m