PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g036926m

Common Name

CISIN_1g036926mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Nin-like

Protein Properties

Length: 169aa MW: 19582.6 Da PI: 7.9607

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g036926m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	78.6	6.7e-25	1	45	8	52
RWP-RK 8 edlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 e++s+yF++pi++AAkeL+v+lT+LK++CR+++I+RWPhRk+ sl orange1.1g036926m 1 ETISQYFYMPITKAAKELNVGLTLLKKRCRELNIRRWPHRKLMSL 45 689***************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.37	1	65	IPR003035	RWP-RK domain
Pfam	PF02042	5.3E-21	1	45	IPR003035	RWP-RK domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0051302	Biological Process	regulation of cell division

Sequence ? help Back to Top
Protein Sequence Length: 169 aa Download sequence Send to blast
ETISQYFYMP ITKAAKELNV GLTLLKKRCR ELNIRRWPHR KLMSLQTLIK NVQELQTEGE 60 GSEERLREAL GILERERKLI EERPDLEMED TTKRLRQACF KANYKKRKFM GTMMGPMVST 120 SSCSSRHHHQ VLLDADIAYD EYQITGNEDL EEMGSLFSCS SSNSIMMI*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription factor. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006477595.2	1e-121	protein RKD1-like
Refseq	XP_024042709.1	1e-121	protein RKD1-like
Swissprot	Q9M9U9	2e-49	RKD1_ARATH; Protein RKD1
TrEMBL	A0A067EWH4	1e-121	A0A067EWH4_CITSI; Uncharacterized protein (Fragment)
TrEMBL	A0A2H5PSD6	1e-120	A0A2H5PSD6_CITUN; Uncharacterized protein
STRING	XP_006477595.1	1e-121	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3966	23	56

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G18790.1	7e-47	RWP-RK domain-containing protein

Link Out ? help Back to Top
Phytozome	orange1.1g036926m