PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g036898m
Common NameCISIN_1g036898mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 397aa    MW: 45169.4 Da    PI: 6.407
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g036898mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM102.94.2e-3211397128
                NAM   7 FhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk....kvka...eekewyfFskrdkkyatgkrknratk......sgyWka 85 
                        F P d el+v+yLkkkv++++l+  + i e+++y++ P++L++    k      +eke++fF++r++k+++g+r nr+t       sgyWk+
  orange1.1g036898m   1 FCPLDWELLVCYLKKKVKNEPLPP-NRIMEIKLYNFTPEQLKQelkvK--YkdlREKEMFFFTPRERKHQNGTRLNRVTGsgpdsgSGYWKS 89 
                        89*******************999.77**************8645442..234577899******************9766666669***** PP

                NAM  86 tgkdkevlskkgelvglkktLvfy........kgrapkgektdWvmheyrl 128
                        tg dk+++  kg+lvg kk Lv+y        +g++++  ktdW+mhe+r+
  orange1.1g036898m  90 TGADKSIKF-KGALVGFKKQLVYYrknpeaggEGEKNDWIKTDWIMHEFRV 139
                        ********9.999***********7777666668888888*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF023653.4E-161139IPR003441NAC domain
SuperFamilySSF1019411.14E-371165IPR003441NAC domain
PROSITE profilePS5100537.6551165IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
FCPLDWELLV CYLKKKVKNE PLPPNRIMEI KLYNFTPEQL KQELKVKYKD LREKEMFFFT  60
PRERKHQNGT RLNRVTGSGP DSGSGYWKST GADKSIKFKG ALVGFKKQLV YYRKNPEAGG  120
EGEKNDWIKT DWIMHEFRVP NNPTPRKKDG TNMELDWALC KIYKKVYKKE KDPPMNHRDD  180
TIESMNHNSE NNGTESTNPT RYNCIMYPEG QSSAGNVNAY SENMQQTFHN STSLEIPHQM  240
DSTNHGVVNC TQYGNPNPNP NANQFASPNP YPNPGQNIKD FSCNYSGVAN SIQYANTSQN  300
DINASSIAFE SMPTQAQVFA DNVNLPEWSS LITAVVDPEI QKLDSYFGIS TASKEPLSPL  360
PPLPSNDPLW WPTITDFEDD SWCSIYQENY NAPNGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-29116523165NO APICAL MERISTEM PROTEIN
1ut4_B1e-29116523165NO APICAL MERISTEM PROTEIN
1ut7_A1e-29116523165NO APICAL MERISTEM PROTEIN
1ut7_B1e-29116523165NO APICAL MERISTEM PROTEIN
4dul_A1e-29116523165NAC domain-containing protein 19
4dul_B1e-29116523165NAC domain-containing protein 19
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015383321.10.0protein ATAF2-like
TrEMBLA0A067F5600.0A0A067F560_CITSI; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-31NAC-like, activated by AP3/PI