PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g035911m

Common Name

CISIN_1g035911mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

TCP

Protein Properties

Length: 263aa MW: 29907 Da PI: 9.652

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g035911m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	136.2	2.7e-42	56	193	3	133
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt...........ssssaseceaesssssas 83 kkdrhski T++g+RdRR+Rls+++a++fFdLqd+LG+dk+skt+eWL+ qakp+ik+l + +++ sec ++++ orange1.1g035911m 56 SKKDRHSKINTAKGPRDRRMRLSLDVARKFFDLQDMLGYDKASKTVEWLMIQAKPEIKKLIERclpevnccgdvGAKGTSEC----EVEAII 143 69***********************************************************4444444444433333444....233333 PP TCP 84 nsssgkaaksaakskksqksaasalnlakesrakarararertrekmrik 133 +s++ ++k + k+kk ++s + + lak+ r+karararert +km + orange1.1g035911m 144 DNSAAIRRKISVKEKKIKHSRKIIRPLAKDLREKARARARERTCKKMWSR 193 444445566666999999999999********************9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.6E-39	56	192	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	35.139	57	115	IPR017887	Transcription factor TCP subgroup
PROSITE profile	PS51370	10.265	172	189	IPR017888	CYC/TB1, R domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000032	Biological Process	regulation of secondary shoot formation
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
HQPLTPDPDD STLPELLVNM VDSSNSEANG LTKDCSVRNQ DVISNRQMPI SKRSSSKKDR 60 HSKINTAKGP RDRRMRLSLD VARKFFDLQD MLGYDKASKT VEWLMIQAKP EIKKLIERCL 120 PEVNCCGDVG AKGTSECEVE AIIDNSAAIR RKISVKEKKI KHSRKIIRPL AKDLREKARA 180 RARERTCKKM WSREFDHVPK LQADEPEKNE LISFGSKSSF GARDTKTQDK NHSLEVLADQ 240 VEEPSSQEQP HQFADFQYFG KQ*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	DEVELOPMENTAL STAGE: Detected in axillary mersitems which appears in the axils of leaves after flowering. During bud vegetative development, down-regulated in the outer layers of the meristem, but accumulates transiently in young leaf primordia. In buds bearing flowers, restricted to the provascular tissue underlying the bud. Accumulates in axillary buds, but disappears at the time of bud outgrowth. {ECO:0000269\|PubMed:17307924}.
Uniprot	TISSUE SPECIFICITY: Expressed in unelongated axillary buds, and, to a lower extent, in axillary structures such as flowers and siliques. {ECO:0000269\|PubMed:17307924, ECO:0000269\|PubMed:17452340}.

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents axillary bud outgrowth and delays early axillary bud development. Indirectly required for the auxin-induced control of apical dominance. {ECO:0000269\|PubMed:17307924, ECO:0000269\|PubMed:17452340}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced during environmentally induced bud dormancy (planting density). Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269\|PubMed:17307924}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015388047.1	0.0	transcription factor CYCLOIDEA-like
Swissprot	A1YKT1	1e-27	TCP18_ARATH; Transcription factor TCP18
TrEMBL	A0A067FAZ5	0.0	A0A067FAZ5_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006485748.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM7269	27	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68800.1	3e-22	TCP domain protein 12

Link Out ? help Back to Top
Phytozome	orange1.1g035911m

Publications ? help Back to Top
Lewis JM, et al. Overexpression of the maize Teosinte Branched1 gene in wheat suppresses tiller development. Plant Cell Rep., 2008. 27(7): p. 1217-25 [PMID:18392625] Niwa M,Endo M,Araki T Florigen is involved in axillary bud development at multiple stages in Arabidopsis. Plant Signal Behav, 2013. 8(11): p. e27167 [PMID:24305631] González-Grandío E,Cubas P Identification of gene functions associated to active and dormant buds in Arabidopsis. Plant Signal Behav, 2014. 9(2): p. e27994 [PMID:24518068] Stes E, et al. Strigolactones as an auxiliary hormonal defence mechanism against leafy gall syndrome in Arabidopsis thaliana. J. Exp. Bot., 2015. 66(16): p. 5123-34 [PMID:26136271] Yao C,Finlayson SA Abscisic Acid Is a General Negative Regulator of Arabidopsis Axillary Bud Growth. Plant Physiol., 2015. 169(1): p. 611-26 [PMID:26149576] González-Grandío E, et al. Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254 [PMID:28028241] Seale M,Bennett T,Leyser O BRC1 expression regulates bud activation potential but is not necessary or sufficient for bud growth inhibition in Arabidopsis. Development, 2017. 144(9): p. 1661-1673 [PMID:28289131] Otori K,Tamoi M,Tanabe N,Shigeoka S Enhancements in sucrose biosynthesis capacity affect shoot branching in Arabidopsis. Biosci. Biotechnol. Biochem., 2017. 81(8): p. 1470-1477 [PMID:28471323] Lantzouni O,Klermund C,Schwechheimer C Largely additive effects of gibberellin and strigolactone on gene expression in Arabidopsis thaliana seedlings. Plant J., 2017. 92(5): p. 924-938 [PMID:28977719] Yang Y, et al. The TIE1 transcriptional repressor controls shoot branching by directly repressing BRANCHED1 in Arabidopsis. PLoS Genet., 2018. 14(3): p. e1007296 [PMID:29570704]