PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g035792m

Common Name

CISIN_1g035792mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

FAR1

Protein Properties

Length: 857aa MW: 97287 Da PI: 6.6391

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g035792m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	53	1.1e-16	66	140	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fY++YA+++GFs+ + ++ k +g i++ +f Cs+e +++++ ++ C+a l++++++++kw vtk++++HnH+++ orange1.1g035792m 66 FYDAYARRMGFSTHVGPFTRAKPDGPIITWDFACSREVFKRKNVES--------------CNAVLRIERKDSEKWTVTKFVEDHNHSMV 140 9*************************************999877..............************************987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.3E-13	66	140	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.1E-29	271	363	IPR018289	MULE transposase domain
PROSITE profile	PS50966	10.917	548	582	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	6.6E-11	553	580	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.6E-8	557	584	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 857 aa Download sequence Send to blast
MEVEGVEVDG EKGDDPVATN AEFDKSKKQN VTENSSEIEV TNHDNGESSK PYVGMEFDSE 60 DAAKTFYDAY ARRMGFSTHV GPFTRAKPDG PIITWDFACS REVFKRKNVE SCNAVLRIER 120 KDSEKWTVTK FVEDHNHSMV TPNKVQYLRP RRHFAGATKN VAEALDVSGD VYITTDGNHL 180 SYEPNSIRNS LPVDPSRSTR NMGPVNYLRQ PSRTRSLGRD AQNLLNYFKK MQAENPGFYY 240 AIQLDDDNRM TNVFWADARS RMAYNHFSDA VIFDTMYRPN QYQVPFAPFT GVNHHGQMVL 300 FGCALLLDES EASFTWLFRT WLSAMNDRPP VSITTDQDRA IQVAVAQVLP ETCHCICKWH 360 ILREGQERLA HIYLAHPSFY GELYSCINFC ETIEEFESSW CSLLDKYDLQ KNEWLHAVYN 420 ARRQWAPVYF RGTFFAALSS NQGISSFFDG YVHQQTTIPL FFKQYERALE NSREKEIELD 480 YDTICTTPVL KTPSPMEQQA ANLYTKKVFA KFQEELVETF VYTANKIEGD GVLSKFRVAK 540 YEQDDKAYIV SFSEMKASCS CQMFEYSGIL CRHILTVFTV TNVLTLPSHY ILKRWTRNAK 600 SSIGLDEQNT DTQGIETLTL RFNKLCQEAI KYAEVGALAV ETYNVAISAL KEAGKKVLAV 660 KKNVAKISPP SSQVVLYSQE DSNKKTPPSV PEMIPSLWPW QEAMPHRFNL NDSGVSVSDL 720 NQPSMVPVSF HRDCGTPDST VVLTCFKSMT WVIENKNSTS ASKVAVINLK LQDYGKKPSG 780 ETEVQFRLTK TTLEPMLRSM AYISQQLSAP ANKVAVINLK LQDTKTTSGE AEVKFQVSRD 840 TLGSMLRSLA YIREQL*

Sequence ? help Back to Top

Protein Sequence Length: 857 aa Download sequence Send to blast

MEVEGVEVDG EKGDDPVATN AEFDKSKKQN VTENSSEIEV TNHDNGESSK PYVGMEFDSE  60
DAAKTFYDAY ARRMGFSTHV GPFTRAKPDG PIITWDFACS REVFKRKNVE SCNAVLRIER  120
KDSEKWTVTK FVEDHNHSMV TPNKVQYLRP RRHFAGATKN VAEALDVSGD VYITTDGNHL  180
SYEPNSIRNS LPVDPSRSTR NMGPVNYLRQ PSRTRSLGRD AQNLLNYFKK MQAENPGFYY  240
AIQLDDDNRM TNVFWADARS RMAYNHFSDA VIFDTMYRPN QYQVPFAPFT GVNHHGQMVL  300
FGCALLLDES EASFTWLFRT WLSAMNDRPP VSITTDQDRA IQVAVAQVLP ETCHCICKWH  360
ILREGQERLA HIYLAHPSFY GELYSCINFC ETIEEFESSW CSLLDKYDLQ KNEWLHAVYN  420
ARRQWAPVYF RGTFFAALSS NQGISSFFDG YVHQQTTIPL FFKQYERALE NSREKEIELD  480
YDTICTTPVL KTPSPMEQQA ANLYTKKVFA KFQEELVETF VYTANKIEGD GVLSKFRVAK  540
YEQDDKAYIV SFSEMKASCS CQMFEYSGIL CRHILTVFTV TNVLTLPSHY ILKRWTRNAK  600
SSIGLDEQNT DTQGIETLTL RFNKLCQEAI KYAEVGALAV ETYNVAISAL KEAGKKVLAV  660
KKNVAKISPP SSQVVLYSQE DSNKKTPPSV PEMIPSLWPW QEAMPHRFNL NDSGVSVSDL  720
NQPSMVPVSF HRDCGTPDST VVLTCFKSMT WVIENKNSTS ASKVAVINLK LQDYGKKPSG  780
ETEVQFRLTK TTLEPMLRSM AYISQQLSAP ANKVAVINLK LQDTKTTSGE AEVKFQVSRD  840
TLGSMLRSLA YIREQL*

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269\|PubMed:15591448}.

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006432553.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_006471345.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_006471347.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Refseq	XP_024039846.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_024039847.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_024039848.1	0.0	protein FAR1-RELATED SEQUENCE 3
Refseq	XP_024952507.1	0.0	protein FAR1-RELATED SEQUENCE 3-like isoform X1
Swissprot	Q9ZVC9	0.0	FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBL	A0A067E906	0.0	A0A067E906_CITSI; Uncharacterized protein
STRING	XP_006471345.1	0.0	(Citrus sinensis)
STRING	XP_006432553.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM118	26	253

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27110.2	0.0	FAR1-related sequence 3

Link Out ? help Back to Top
Phytozome	orange1.1g035792m

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]