PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g035726m | ||||||||
Common Name | CISIN_1g035726mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 102aa MW: 11623.1 Da PI: 9.7264 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 81.5 | 1.7e-25 | 6 | 81 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ewyfFs+ +kkya+++r r+tk g Wk tg d+++ ++ ++e++g+kk Lvf+kg+ +k++kt+Wv+hey+ orange1.1g035726m 6 DDEEWYFFSELQKKYANSDRVDRTTKVGSWKVTGGDRQIWDNcGKEVIGVKKNLVFHKGHGSKAKKTSWVIHEYHS 81 678**************************************988889***************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 28.293 | 1 | 100 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 3.01E-25 | 5 | 86 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.0E-12 | 8 | 80 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
QAATPDDEEW YFFSELQKKY ANSDRVDRTT KVGSWKVTGG DRQIWDNCGK EVIGVKKNLV 60 FHKGHGSKAK KTSWVIHEYH SSKASIHQAI SSVLYNLFFF I* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 2e-15 | 7 | 85 | 73 | 149 | NAC domain-containing protein 19 |
3swm_B | 2e-15 | 7 | 85 | 73 | 149 | NAC domain-containing protein 19 |
3swm_C | 2e-15 | 7 | 85 | 73 | 149 | NAC domain-containing protein 19 |
3swm_D | 2e-15 | 7 | 85 | 73 | 149 | NAC domain-containing protein 19 |
3swp_A | 2e-15 | 7 | 85 | 73 | 149 | NAC domain-containing protein 19 |
3swp_B | 2e-15 | 7 | 85 | 73 | 149 | NAC domain-containing protein 19 |
3swp_C | 2e-15 | 7 | 85 | 73 | 149 | NAC domain-containing protein 19 |
3swp_D | 2e-15 | 7 | 85 | 73 | 149 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024043357.1 | 1e-69 | NAC domain-containing protein 62 | ||||
TrEMBL | A0A067H6V4 | 9e-69 | A0A067H6V4_CITSI; Uncharacterized protein (Fragment) | ||||
TrEMBL | A0A2H5NY19 | 2e-68 | A0A2H5NY19_CITUN; Uncharacterized protein (Fragment) | ||||
STRING | XP_006491409.1 | 1e-59 | (Citrus sinensis) | ||||
STRING | XP_006444688.1 | 1e-59 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04410.1 | 6e-24 | NAC domain containing protein 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g035726m |