PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g033478m | ||||||||
Common Name | CISIN_1g033096mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | LSD | ||||||||
Protein Properties | Length: 119aa MW: 13106.4 Da PI: 7.9188 | ||||||||
Description | LSD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-LSD1 | 45.6 | 1.2e-14 | 35 | 59 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 Cg+Cr lL+YPrGA++V+C++C+tV orange1.1g033478m 35 CGSCRRLLAYPRGARHVKCSCCQTV 59 ************************9 PP | |||||||
2 | zf-LSD1 | 39.5 | 9.2e-13 | 73 | 97 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C +lL+YP+GApsVRC++C +V orange1.1g033478m 73 CASCAVLLMYPYGAPSVRCSSCCFV 97 **********************876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
TIGRFAMs | TIGR01053 | 2.6E-18 | 32 | 62 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 4.0E-12 | 35 | 59 | IPR005735 | Zinc finger, LSD1-type |
TIGRFAMs | TIGR01053 | 1.8E-9 | 70 | 98 | IPR005735 | Zinc finger, LSD1-type |
Pfam | PF06943 | 9.2E-11 | 73 | 97 | IPR005735 | Zinc finger, LSD1-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009617 | Biological Process | response to bacterium |
Sequence ? help Back to Top |
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Protein Sequence Length: 119 aa Download sequence Send to blast |
MTTTWWSVAR VNSLSQESFW LTLTCYHQEM AQMVCGSCRR LLAYPRGARH VKCSCCQTVN 60 FVLEAHQVGQ VKCASCAVLL MYPYGAPSVR CSSCCFVTEI GVCGLSLFLC MCDLANQI* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467804.1 | 3e-47 | protein LOL2 | ||||
Swissprot | O65426 | 4e-34 | LOL2_ARATH; Protein LOL2 | ||||
TrEMBL | A0A067G8G9 | 4e-81 | A0A067G8G9_CITSI; Uncharacterized protein | ||||
STRING | XP_006467804.1 | 1e-46 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21610.1 | 2e-36 | lsd one like 2 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g033478m |