PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g032204m | ||||||||
Common Name | CISIN_1g028980mg, LOC102611194 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | YABBY | ||||||||
Protein Properties | Length: 146aa MW: 16489.4 Da PI: 10.4093 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 126.8 | 3.1e-39 | 43 | 118 | 94 | 170 |
YABBY 94 tsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++++k ++e+ r p PekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl orange1.1g032204m 43 MRTPTNK-ATEERVVNRRESPHSTTPEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 118 2222222.33333334455668999**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 8.2E-39 | 19 | 118 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 3.27E-8 | 58 | 111 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 7.2E-5 | 65 | 112 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 146 aa Download sequence Send to blast |
MAAAFQSLSW QDVHHHQAPS YASPECRIDL GSSSKCNNKI SAMRTPTNKA TEERVVNRRE 60 SPHSTTPEKR QRVPSAYNQF IKEEIQRIKA NNPDISHREA FSTAAKNWAH FPHIHFGLML 120 EANNQPKLDD ASGNRLMSRT ALRNK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.11734 | 1e-95 | callus| flower| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ667744 | 2e-54 | KJ667744.1 Solanum sisymbriifolium YAB5 protein mRNA, complete cds. | |||
GenBank | KJ667746 | 2e-54 | KJ667746.1 Solanum virginianum YAB5 protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450895.1 | 1e-105 | axial regulator YABBY 5 isoform X1 | ||||
Refseq | XP_006475868.1 | 1e-105 | axial regulator YABBY 5 isoform X1 | ||||
Swissprot | Q8GW46 | 3e-47 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A067GNH4 | 1e-104 | A0A067GNH4_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A067GY42 | 1e-104 | A0A067GY42_CITSI; Uncharacterized protein | ||||
TrEMBL | V4UDN9 | 1e-104 | V4UDN9_9ROSI; Uncharacterized protein | ||||
TrEMBL | V4UIV5 | 1e-104 | V4UIV5_9ROSI; Uncharacterized protein | ||||
STRING | XP_006475868.1 | 1e-104 | (Citrus sinensis) | ||||
STRING | XP_006450895.1 | 1e-104 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-49 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g032204m |
Entrez Gene | 102611194 |
Publications ? help Back to Top | |||
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