PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g030782m
Common NameCISIN_1g023847mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 172aa    MW: 18878.2 Da    PI: 8.476
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g030782mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.44.1e-115299455
                       HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                       +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++YI+sLq
  orange1.1g030782m 52 SHSLAERARREKISERMKILQDLVPGC----NKVIGKALVLDEIINYIQSLQ 99
                       8*************************9....677*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000833.75E-1046103No hitNo description
SuperFamilySSF474591.7E-1846118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.8284898IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.3E-1848117IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-85299IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-1054104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 172 aa     Download sequence    Send to blast
MKTSGSKNEN GSKAEVEASS AAGNKPAESS KPSEPPKDYI HVRARRGQAT DSHSLAERAR  60
REKISERMKI LQDLVPGCNK VIGKALVLDE IINYIQSLQR QVEFLSMKLE AVNSRMNLTP  120
TIEGFHPKDL GEQAFDATGM IFGSQTAREY AQGSQQDWLH MQVGGSFERA T*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.8879e-85callus| flower| fruit| vegetative meristem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that forms a ternary complex with RSS3 and TIFY11A/JAZ9 to negatively regulate jasmonate-responsive genes. {ECO:0000269|PubMed:23715469}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439701.11e-124transcription factor bHLH79
RefseqXP_006476705.11e-124transcription factor bHLH79
SwissprotQ69WS33e-71BH094_ORYSJ; Transcription factor BHLH094
TrEMBLA0A067G3201e-125A0A067G320_CITSI; Uncharacterized protein
STRINGXP_006476705.11e-124(Citrus sinensis)
STRINGXP_006439701.11e-124(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G59640.12e-75BIG PETAL P