PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g030168m | ||||||||
Common Name | CISIN_1g025990mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 183aa MW: 20461.5 Da PI: 10.2 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 62.1 | 1.8e-19 | 2 | 79 | 54 | 128 |
NAM 54 eekewyfFskrdkkya..tgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128 +ek+ yfFs+ ++++a ++ + + a+ sgyWk gk++++l++ ++++vg++ktL+f +g++ + +kt+Wvmh+y+l orange1.1g030168m 2 KEKKRYFFSNIRNESAidNDGKCKIAAGSGYWKPVGKNRQILASgTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHL 79 46788***99888877434555555999**************9967778***************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 25.916 | 1 | 109 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 8.89E-22 | 2 | 109 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.6E-9 | 7 | 79 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 183 aa Download sequence Send to blast |
MKEKKRYFFS NIRNESAIDN DGKCKIAAGS GYWKPVGKNR QILASGTKQV VGIRKTLIFC 60 EGKRGHETKT QWVMHQYHLV AIATNTNLTQ PVFKMVIIGD WVVYRIFQRK KKPKKRGVVS 120 SNNLNITKNS HKNQLQVIDF SVIEADQTDL LGPPPQPVSS CSSEITADEL SPSVLDQEET 180 SA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-14 | 3 | 115 | 70 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-14 | 3 | 115 | 70 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-14 | 3 | 115 | 70 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-14 | 3 | 115 | 70 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-14 | 3 | 115 | 73 | 174 | NAC domain-containing protein 19 |
3swm_B | 5e-14 | 3 | 115 | 73 | 174 | NAC domain-containing protein 19 |
3swm_C | 5e-14 | 3 | 115 | 73 | 174 | NAC domain-containing protein 19 |
3swm_D | 5e-14 | 3 | 115 | 73 | 174 | NAC domain-containing protein 19 |
3swp_A | 5e-14 | 3 | 115 | 73 | 174 | NAC domain-containing protein 19 |
3swp_B | 5e-14 | 3 | 115 | 73 | 174 | NAC domain-containing protein 19 |
3swp_C | 5e-14 | 3 | 115 | 73 | 174 | NAC domain-containing protein 19 |
3swp_D | 5e-14 | 3 | 115 | 73 | 174 | NAC domain-containing protein 19 |
4dul_A | 5e-14 | 3 | 115 | 70 | 171 | NAC domain-containing protein 19 |
4dul_B | 5e-14 | 3 | 115 | 70 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 107 | 114 | QRKKKPKK |
Expression -- UniGene ? help Back to Top | ||||||
---|---|---|---|---|---|---|
UniGene ID | E-value | Expressed in | ||||
Csi.6664 | 6e-43 | fruit| stem |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447003.1 | 1e-132 | NAC domain-containing protein 83 | ||||
Refseq | XP_006468841.1 | 1e-132 | NAC domain-containing protein 83-like | ||||
TrEMBL | A0A067F8Z8 | 1e-133 | A0A067F8Z8_CITSI; Uncharacterized protein | ||||
STRING | XP_006468841.1 | 1e-131 | (Citrus sinensis) | ||||
STRING | XP_006447003.1 | 1e-131 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G13180.1 | 5e-22 | NAC domain containing protein 83 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g030168m |