PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g029817m | ||||||||
Common Name | CISIN_1g029817mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 188aa MW: 20382.7 Da PI: 5.1031 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54 | 4.2e-17 | 34 | 83 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ++GVr ++ +g++v+eIr p e ++r++lg+fg+ae+Aa+a++ a+ +l+g orange1.1g029817m 34 PFRGVRKRR-WGSYVSEIRLPGE---KTRIWLGSFGSAEKAARAYDSAAFYLKG 83 69****887.**********944...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 19.968 | 34 | 91 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-31 | 34 | 97 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.8E-27 | 35 | 93 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.48E-18 | 35 | 93 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 2.5E-8 | 35 | 46 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 2.2E-10 | 35 | 83 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 8.16E-27 | 35 | 93 | No hit | No description |
PRINTS | PR00367 | 2.5E-8 | 57 | 73 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 188 aa Download sequence Send to blast |
MSVTTQTQEP SQLQPGSSTS KPGSKKRTRQ NDTPFRGVRK RRWGSYVSEI RLPGEKTRIW 60 LGSFGSAEKA ARAYDSAAFY LKGNLATLNF PASAGALPRP ESCSRKDIQV AAAKAAALVE 120 VGDRIESECS GSGGEPDCGD WWERETTASD EVKVAPLPSP PRFDSDIGEL YCWMDDDNFL 180 LGSCLEL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 2e-14 | 35 | 91 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 24 | 41 | KKRTRQNDTPFRGVRKRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006441807.2 | 1e-135 | ethylene-responsive transcription factor ERF023 | ||||
TrEMBL | A0A067E850 | 1e-134 | A0A067E850_CITSI; Uncharacterized protein | ||||
STRING | XP_006441807.1 | 1e-134 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM20558 | 5 | 6 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60490.1 | 3e-28 | ERF family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g029817m |