PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g029281m
Common NameCISIN_1g025990mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 197aa    MW: 22660.2 Da    PI: 10.0752
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g029281mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM120.21.9e-37151421128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya..tgkrknratksgyWkatgkdk 90 
                        lp G+rF+Ptdeelvv+yLk+kv g +l++ ++i+e+d+++++P  Lp  +  +ek+ yfFs+ ++++a  ++ + + a+ sgyWk  gk++
  orange1.1g029281m  15 LPIGYRFRPTDEELVVHYLKRKVFGLPLPA-SIIPELDVFQSHPLGLPGDM--KEKKRYFFSNIRNESAidNDGKCKIAAGSGYWKPVGKNR 103
                        699***************************.89***************665..67899***99888877434555555999*********** PP

                NAM  91 evlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                        ++l++ ++++vg++ktL+f +g++ + +kt+Wvmh+y+l
  orange1.1g029281m 104 QILASgTKQVVGIRKTLIFCEGKRGHETKTQWVMHQYHL 142
                        ***9967778***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-419144IPR003441NAC domain
PROSITE profilePS5100539.36615178IPR003441NAC domain
PfamPF023651.2E-2116142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 197 aa     Download sequence    Send to blast
MEKQNNYVVN GGLKLPIGYR FRPTDEELVV HYLKRKVFGL PLPASIIPEL DVFQSHPLGL  60
PGDMKEKKRY FFSNIRNESA IDNDGKCKIA AGSGYWKPVG KNRQILASGT KQVVGIRKTL  120
IFCEGKRGHE TKTQWVMHQY HLVAIATNTN LTQPVSPFFF FWENLCDHIV IKSRLYPRKR  180
GFEPHISYIY SRDFDN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-261315318156NAC domain-containing protein 19
3swm_B4e-261315318156NAC domain-containing protein 19
3swm_C4e-261315318156NAC domain-containing protein 19
3swm_D4e-261315318156NAC domain-containing protein 19
3swp_A4e-261315318156NAC domain-containing protein 19
3swp_B4e-261315318156NAC domain-containing protein 19
3swp_C4e-261315318156NAC domain-containing protein 19
3swp_D4e-261315318156NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.66641e-151fruit| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Up-regulated during xylem vessel element differentiation. {ECO:0000269|PubMed:20388856}.
UniprotTISSUE SPECIFICITY: Expressed in xylem and phloem cells in roots and inflorescence stems (PubMed:20388856). Highly expressed in senescent leaves. Expressed in roots, and abscission and dehiscence tissues, such as axils of bracts and abscission zones in cauline leaves and siliques (PubMed:21673078). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that negatively regulates the expression of genes involved in xylem vessel formation. Represses the transcriptional activation activity of NAC030/VND7, which regulates protoxylem vessel differentiation by promoting immature xylem vessel-specific genes expression (PubMed:20388856). Transcriptional activator that regulates the COLD-REGULATED (COR15A and COR15B) and RESPONSIVE TO DEHYDRATION (LTI78/RD29A and LTI65/RD29B) genes by binding directly to their promoters. Mediates signaling crosstalk between salt stress response and leaf aging process (PubMed:21673078). May play a role in DNA replication of mungbean yellow mosaic virus (PubMed:24442717). {ECO:0000269|PubMed:20388856, ECO:0000269|PubMed:21673078, ECO:0000269|PubMed:24442717}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and salt stress. {ECO:0000269|PubMed:21673078}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447003.11e-111NAC domain-containing protein 83
RefseqXP_006468841.11e-111NAC domain-containing protein 83-like
SwissprotQ9FY931e-42NAC83_ARATH; NAC domain-containing protein 83
TrEMBLA0A067FCI41e-145A0A067FCI4_CITSI; Uncharacterized protein
STRINGXP_006468841.11e-111(Citrus sinensis)
STRINGXP_006447003.11e-111(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14000.15e-49NAC domain containing protein 84
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]