PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g029016m | ||||||||
Common Name | CISIN_1g029016mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 201aa MW: 22776.5 Da PI: 4.9172 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 117.7 | 1.2e-36 | 13 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 lppGfrF Ptdeel+v++L++kv+ +++ +vi+++d+y ++Pw+L+ k+ ae ++wyf+s++ +nr+t +gyWk g +++v orange1.1g029016m 13 LPPGFRFCPTDEELLVHFLQRKVALLPCHP-DVIPDLDLYPYDPWQLNGKALAEGNQWYFYSRK--------TQNRMTGNGYWKPMGIEESV 95 79*************************999.99**************977778899*****997........4589**************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 l++ +++vglkk +f+ g+a+ g+kt+W+m+eyrl orange1.1g029016m 96 LTRADKKVGLKKYYIFHLGEASAGVKTNWIMQEYRL 131 **********************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.03E-46 | 10 | 168 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.443 | 13 | 169 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.3E-21 | 14 | 131 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010089 | Biological Process | xylem development | ||||
GO:0043067 | Biological Process | regulation of programmed cell death | ||||
GO:0048367 | Biological Process | shoot system development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 201 aa Download sequence Send to blast |
MGDNINANAN VNLPPGFRFC PTDEELLVHF LQRKVALLPC HPDVIPDLDL YPYDPWQLNG 60 KALAEGNQWY FYSRKTQNRM TGNGYWKPMG IEESVLTRAD KKVGLKKYYI FHLGEASAGV 120 KTNWIMQEYR LSDSAAASSS NTSSSRSSKR RVNSKTDYSK WVICRVFERN CDDDDDGAEL 180 SCMDEVFLSL DDLDEISLPN * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 6e-38 | 9 | 170 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 6e-38 | 9 | 170 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 6e-38 | 9 | 170 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 6e-38 | 9 | 170 | 13 | 166 | NO APICAL MERISTEM PROTEIN |
3swm_A | 6e-38 | 9 | 170 | 16 | 169 | NAC domain-containing protein 19 |
3swm_B | 6e-38 | 9 | 170 | 16 | 169 | NAC domain-containing protein 19 |
3swm_C | 6e-38 | 9 | 170 | 16 | 169 | NAC domain-containing protein 19 |
3swm_D | 6e-38 | 9 | 170 | 16 | 169 | NAC domain-containing protein 19 |
3swp_A | 6e-38 | 9 | 170 | 16 | 169 | NAC domain-containing protein 19 |
3swp_B | 6e-38 | 9 | 170 | 16 | 169 | NAC domain-containing protein 19 |
3swp_C | 6e-38 | 9 | 170 | 16 | 169 | NAC domain-containing protein 19 |
3swp_D | 6e-38 | 9 | 170 | 16 | 169 | NAC domain-containing protein 19 |
4dul_A | 6e-38 | 9 | 170 | 13 | 166 | NAC domain-containing protein 19 |
4dul_B | 6e-38 | 9 | 170 | 13 | 166 | NAC domain-containing protein 19 |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in root xylem vessels (PubMed:15923329). Expressed in stems, vascular tissue of cauline leaves and tracheary elements of sepals (PubMed:18069942). {ECO:0000269|PubMed:15923329, ECO:0000269|PubMed:18069942}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that influences tracheary elements and xylem development by negatively regulating secondary cell wall fiber synthesis and programmed cell death. {ECO:0000269|PubMed:18069942, ECO:0000269|PubMed:20458494}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006432457.1 | 1e-150 | NAC domain-containing protein 104 | ||||
Swissprot | Q8GWK6 | 2e-84 | NC104_ARATH; NAC domain-containing protein 104 | ||||
TrEMBL | A0A067EYC8 | 1e-148 | A0A067EYC8_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PUU0 | 1e-148 | A0A2H5PUU0_CITUN; Uncharacterized protein | ||||
TrEMBL | V4SY37 | 1e-148 | V4SY37_9ROSI; Uncharacterized protein | ||||
STRING | XP_006432457.1 | 1e-149 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3674 | 28 | 62 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64530.1 | 1e-81 | xylem NAC domain 1 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g029016m |
Publications ? help Back to Top | |||
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