PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g028680m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 206aa MW: 23838.6 Da PI: 9.8129

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g028680m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.7	0.00037	39	62	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+ksF+ L +H + H orange1.1g028680m 39 WRCGYCKKSFRAEKFLDQHFDNrH 62 58**********999999976655 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	41	62	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 206 aa Download sequence Send to blast
MPFVEQVQYE ISSKCRLHPD NDMFRDQEQH KIHVDINEWR CGYCKKSFRA EKFLDQHFDN 60 RHNNLLNVSH GKCLADLCGA LHCDFVMNSK SSRSKCNPAA VAKNRHLCES LANRCFPINQ 120 GPSASRLHEL FLRQFCDAHK CPRKSQPFPK GGRKQPSVFY LSISILTLML LPIFYLIVYL 180 YQREMRGGTQ ELKRIPRVGR KAKPS*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024045410.1	1e-153	uncharacterized protein LOC18047725
TrEMBL	V4TTQ9	1e-152	V4TTQ9_9ROSI; Uncharacterized protein
STRING	XP_006440031.1	1e-153	(Citrus clementina)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G63280.1	1e-105	C2H2-like zinc finger protein

Link Out ? help Back to Top
Phytozome	orange1.1g028680m