PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g028678m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 206aa MW: 23838.6 Da PI: 9.8129 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.7 | 0.00037 | 39 | 62 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+ksF+ L +H + H orange1.1g028678m 39 WRCGYCKKSFRAEKFLDQHFDNrH 62 58**********999999976655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 41 | 62 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MPFVEQVQYE ISSKCRLHPD NDMFRDQEQH KIHVDINEWR CGYCKKSFRA EKFLDQHFDN 60 RHNNLLNVSH GKCLADLCGA LHCDFVMNSK SSRSKCNPAA VAKNRHLCES LANRCFPINQ 120 GPSASRLHEL FLRQFCDAHK CPRKSQPFPK GGRKQPSVFY LSISILTLML LPIFYLIVYL 180 YQREMRGGTQ ELKRIPRVGR KAKPS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024045410.1 | 1e-153 | uncharacterized protein LOC18047725 | ||||
TrEMBL | V4TTQ9 | 1e-152 | V4TTQ9_9ROSI; Uncharacterized protein | ||||
STRING | XP_006440031.1 | 1e-153 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63280.1 | 1e-105 | C2H2-like zinc finger protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g028678m |