PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g028223m
Common NameCISIN_1g028223mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 213aa    MW: 23653.2 Da    PI: 9.0857
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g028223mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.00035981123
                       EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                       +kC +C++ F ++  L  H++ H
  orange1.1g028223m 59 FKCLYCPRKFYSSQALGGHQNAH 81
                       89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576677.96E-65786No hitNo description
PROSITE profilePS5015710.975986IPR007087Zinc finger, C2H2
PROSITE patternPS0002806181IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010582Biological Processfloral meristem determinacy
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MKMADPNMYN FLMSQQQPPS CSNPRPTKRQ AQAQQHPHPS LPPPPAPVAT STSSTARLFK  60
CLYCPRKFYS SQALGGHQNA HKRERAAARR NITFPINVDP PSCFTAASHH VNPTHHFPSF  120
DHQHGSPSPF LVDHARFDPV QYPYQYQFHQ YGQYNQYHSS SSTTSAVAAA SPTNGPNYHS  180
FAAGPVTPDA FAFTQSDDDY AEKVKVDLNL RL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006469107.21e-154zinc finger protein KNUCKLES
TrEMBLA0A067E5F31e-153A0A067E5F3_CITSI; Uncharacterized protein
STRINGXP_006469107.11e-151(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69662031
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.11e-17C2H2 family protein