PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g027532m | ||||||||
Common Name | CISIN_1g022353mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 223aa MW: 25427.3 Da PI: 5.7583 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.3 | 1e-30 | 32 | 90 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers+ dp+++ itY+ eHnh+ orange1.1g027532m 32 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSSVDPSMLLITYSCEHNHP 90 69*************************998****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.2E-31 | 25 | 92 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 32.053 | 26 | 92 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-26 | 27 | 92 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.5E-36 | 31 | 91 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-26 | 33 | 90 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 223 aa Download sequence Send to blast |
MMSRRAMQKR VISVPIKEVE GSRLKGESAP PSDSWAWRKY GQKPIKGSPY PRGYYRCSSS 60 KGCPARKQVE RSSVDPSMLL ITYSCEHNHP WPLPSTSRNH HHHHHNSKAA KPDRDPEPEP 120 EPEPEPEPEH EEKFTDLADH DNALMTTSAD EFTWFGEMET TTSTILESPI FADRSQSDCD 180 SLSMFFPMRE EDESLFADLG ELPECSMVFR RHRNLGPEVQ IC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 7e-21 | 9 | 92 | 6 | 79 | Disease resistance protein RRS1 |
5w3x_D | 7e-21 | 9 | 92 | 6 | 79 | Disease resistance protein RRS1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.9079 | 0.0 | callus| fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00167 | DAP | Transfer from AT1G29280 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006467614.1 | 1e-164 | probable WRKY transcription factor 65 | ||||
Swissprot | Q9LP56 | 6e-83 | WRK65_ARATH; Probable WRKY transcription factor 65 | ||||
TrEMBL | A0A067GDX1 | 1e-164 | A0A067GDX1_CITSI; Uncharacterized protein | ||||
STRING | XP_006467614.1 | 1e-163 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29280.1 | 4e-85 | WRKY DNA-binding protein 65 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g027532m |
Publications ? help Back to Top | |||
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