PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g026746m
Common NameCISIN_1g026746mg, LOC102617626
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 235aa    MW: 26616 Da    PI: 6.8841
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g026746mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.93.2e-0784130455
                        HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                         h ++Er RR+r ++ +  L ++lP+      +K++K +i++ + + I++Lq
  orange1.1g026746m  84 RHVINERMRRERERQNYLALHSILPPG-----TKNDKNSIVKTTANMIHELQ 130
                        5899*********************97.....8*****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474595.76E-1179145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.49680129IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.6E-684146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-484130IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-486135IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MDEFLGDQFH GEGDIFFWLD NEALPVNQSA FVAYANRPRT EFVSQNAGNG SNSLSANKRM  60
IQFLRKIQPA KMEHPELDSE RGHRHVINER MRRERERQNY LALHSILPPG TKNDKNSIVK  120
TTANMIHELQ CCKQELERKN YELESNLGLK NGGTKVRVNV DNPTSGVDSM LEVLKCLKDL  180
GSSTRSIQAE FSDQKLTAVL DIETQMGAGA VEKDVQRALQ KVEDKLLFRH YQEG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18994RMRRER
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.176262e-46callus| fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006489519.11e-176transcription factor bHLH92
TrEMBLA0A067E3Q11e-175A0A067E3Q1_CITSI; Uncharacterized protein
STRINGXP_006489519.11e-176(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96022537
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43650.15e-40bHLH family protein