PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g026704m | ||||||||
Common Name | CISIN_1g026704mg, LOC102622870 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 235aa MW: 26213.5 Da PI: 7.9214 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 86.4 | 4.4e-27 | 118 | 207 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 fYn+Y+ ++GF +r+++ ++skr+g+i+++ +vC+keg+r++ +++ ++k+ r r+ tr+gCka++ v+k++ gkw+vtk+++eH+H+l+ orange1.1g026704m 118 FYNAYGMRLGFITRINYRTRSKRDGSIISQSLVCNKEGYRKPPSSRhEVKSIRLRPPTRVGCKAMISVRKMSFGKWVVTKFVKEHTHALS 207 ****************************************99887747788899**********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 2.5E-25 | 118 | 207 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence Send to blast |
MDSRHGMGIQ LKQNDKDAQD KVSDDANDNE QEDSVLYSEI QLEQNSYEII GGTHFITTDN 60 EAHLGNEGMA IGSSVEMVSQ VEKNDKMTHS SGVQLNTVCG DEPYVGQEFE SVAAAHAFYN 120 AYGMRLGFIT RINYRTRSKR DGSIISQSLV CNKEGYRKPP SSRHEVKSIR LRPPTRVGCK 180 AMISVRKMSF GKWVVTKFVK EHTHALSTTQ GQTTVLYRQI VVNSCPYPSR LVCI* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 134 | 139 | RTRSKR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006480508.1 | 1e-177 | protein FAR1-RELATED SEQUENCE 12 isoform X1 | ||||
Refseq | XP_006480509.1 | 1e-178 | protein FAR1-RELATED SEQUENCE 12 isoform X2 | ||||
TrEMBL | A0A067E3A0 | 1e-176 | A0A067E3A0_CITSI; Uncharacterized protein | ||||
STRING | XP_006480508.1 | 1e-177 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22968 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 3e-45 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g026704m |
Entrez Gene | 102622870 |