PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g026227m | ||||||||
Common Name | CISIN_1g025187mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | GeBP | ||||||||
Protein Properties | Length: 242aa MW: 28273.2 Da PI: 8.9065 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 81.1 | 1.7e-25 | 47 | 141 | 2 | 97 |
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelsk 93 +f+r+w+e Dei +LqGl+d a+ g d+ fye +++ +s +sk ql+eK+rrL+kKf+ ++++++g ++s + hd++ fels+ orange1.1g026227m 47 KFHRIWTEPDEIRFLQGLLDS-ASLGLTFPRDLPIFYERFSNAMSQPYSKYQLSEKLRRLRKKFRVTSSRISRGLNISHLNFHDRNLFELSM 137 699*****************8.889999999************************************************************* PP DUF573 94 kiWg 97 k+W orange1.1g026227m 138 KLWS 141 ***7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 1.4E-26 | 48 | 141 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 242 aa Download sequence Send to blast |
MDSLKPSSAS KSKLPIKRKS EQSHNQDQSI TTVDFTDPTN INPPPFKFHR IWTEPDEIRF 60 LQGLLDSASL GLTFPRDLPI FYERFSNAMS QPYSKYQLSE KLRRLRKKFR VTSSRISRGL 120 NISHLNFHDR NLFELSMKLW SPECLPTSPF GKISVCGGNV DVDFSSCGKK EKETIEEVAV 180 ARSVLDVFDE CLKEVRMIVA NQPKEEREKD FERLWREQRF AEFDVLTRRL RLVLDDYFNW 240 Q* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006482084.1 | 1e-169 | probable transcription factor At4g00390 isoform X1 | ||||
TrEMBL | A0A067EI76 | 1e-177 | A0A067EI76_CITSI; Uncharacterized protein | ||||
STRING | XP_006482084.1 | 1e-168 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04930.2 | 2e-17 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g026227m |