PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g026161m | ||||||||
Common Name | CISIN_1g026161mg, LOC102629897 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 243aa MW: 26374.4 Da PI: 7.2332 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 101.8 | 4.5e-32 | 48 | 103 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 k+rY+eClkNhA+ +Ggha+DGCgEfm++ g+egt ++lkCaAC+CHRnFHR+ev++ orange1.1g026161m 48 KARYRECLKNHAVGIGGHALDGCGEFMAA-GDEGTLDGLKCAACNCHRNFHRKEVDS 103 789*************************9.999*********************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.9E-28 | 49 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 5.3E-29 | 50 | 101 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 7.0E-23 | 50 | 103 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.067 | 51 | 100 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 8.6E-32 | 166 | 241 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.35E-19 | 169 | 240 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 2.0E-25 | 179 | 235 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MEFEDHEEQE EEMGLPAGYD SSLGNSSQVR MGSSGGQATA EAAHPGRKAR YRECLKNHAV 60 GIGGHALDGC GEFMAAGDEG TLDGLKCAAC NCHRNFHRKE VDSSVVTPMA AGVPAAGGGE 120 VFFHPSQVPQ FTPYYRTPAG YLHVAAHHRP LALPSTSGGG HSREDQEDAS NLGGSGGSRK 180 RFRTKFTPEQ KDRMLELAEK LGWRIQKHDE EVVQQFCNDT GVKRHVLKVW MHNNKHTLGK 240 KP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 1e-25 | 180 | 237 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006426297.1 | 0.0 | zinc-finger homeodomain protein 2 | ||||
Refseq | XP_006466284.1 | 0.0 | zinc-finger homeodomain protein 2 | ||||
Swissprot | A2Z259 | 7e-81 | ZHD1_ORYSI; Zinc-finger homeodomain protein 1 | ||||
Swissprot | Q6YXH5 | 7e-81 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A067FAZ1 | 0.0 | A0A067FAZ1_CITSI; Uncharacterized protein | ||||
TrEMBL | V4SG21 | 0.0 | V4SG21_9ROSI; Uncharacterized protein | ||||
STRING | XP_006466284.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006426297.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4505 | 24 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 9e-71 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g026161m |
Entrez Gene | 102629897 |
Publications ? help Back to Top | |||
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