PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g025968m
Common NameCISIN_1g023721mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family B3
Protein Properties Length: 246aa    MW: 27869.1 Da    PI: 9.2477
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g025968mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B357.32.8e-181572401699
                        EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE..E-SS.SEE..EEEEE-S CS
                 B3  16 lvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk..ldgr.sefelvvkvfrk 99 
                        + ++ + +++hg+k   + +++l+d++gr+W vk+++r + gr+v+t+GW++F ++++L++gD +vF+  l++  +++e++v+v+rk
  orange1.1g025968m 157 VNVSVRVVRSHGIK--LEPEMMLRDQNGRKWPVKISFRTN-GRIVITGGWSDFWREQKLEAGDKCVFEfvLTRGnMSKEMKVQVVRK 240
                        56677889999866..4449***************98777.589************************76555559*******9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508639.347147IPR003340B3 DNA binding domain
SuperFamilySSF1019363.34E-8749IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.0E-7749IPR015300DNA-binding pseudobarrel domain
CDDcd100171.53E-13136239No hitNo description
SuperFamilySSF1019361.8E-20140239IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.7E-22140240IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.76142241IPR003340B3 DNA binding domain
SMARTSM010193.4E-15145241IPR003340B3 DNA binding domain
PfamPF023625.8E-16158240IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MEEVEGVIVI KDCWERFACV HSLELGDFLV FKYNGSSLFD VKIYGINGCL KEGTNTTHHK  60
KETPIADMNA IPVKKEIGRE AEQTSIMDDP SCNQDDLEIM LISSGKRGGS SVASRVKTRL  120
RDEKDTGEDR AFKAARLVVP KNPHFVSVFS QYSRYAVNVS VRVVRSHGIK LEPEMMLRDQ  180
NGRKWPVKIS FRTNGRIVIT GGWSDFWREQ KLEAGDKCVF EFVLTRGNMS KEMKVQVVRK  240
MKTCL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006425800.10.0putative B3 domain-containing protein At5g66980
RefseqXP_006466673.10.0putative B3 domain-containing protein At5g66980
TrEMBLA0A067GVN80.0A0A067GVN8_CITSI; Uncharacterized protein
TrEMBLV4SJL30.0V4SJL3_9ROSI; Uncharacterized protein
STRINGXP_006466673.10.0(Citrus sinensis)
STRINGXP_006425800.10.0(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66980.15e-26B3 family protein