PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g025532m | ||||||||
Common Name | CISIN_1g025532mg, LOC102624315 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 252aa MW: 28501 Da PI: 6.7217 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 91 | 1.6e-28 | 87 | 174 | 2 | 91 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 fYn+YA++vGF +r+sk ++s+r+g+ + r +vC+keg+r ++k++ k r+raetr+gC+a++ v+k ++g+w+vtk+++eH+H+l+p orange1.1g025532m 87 FYNAYATRVGFVIRVSKLSRSRRDGSAIGRALVCNKEGYRLPDKRE--KIVRQRAETRVGCRAMILVRKVNSGQWVVTKFVKEHTHPLTP 174 ******************************************9988..9**************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 8.7E-26 | 87 | 174 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 252 aa Download sequence Send to blast |
MDYRIDSNVN GELVGNSVDV GDRVGNEDEI YRTSVEVTLH QDQDNKVDPD SLALETIPEG 60 IPSVASVQAD EPYVGQQFES EAAAHAFYNA YATRVGFVIR VSKLSRSRRD GSAIGRALVC 120 NKEGYRLPDK REKIVRQRAE TRVGCRAMIL VRKVNSGQWV VTKFVKEHTH PLTPGKGRKD 180 CIYDQYPNEH DKIRELSQQL ALEKKRAANY KRHLELIVEQ IEEHNESLAK KIQHVVDSVK 240 NIEDEEQKSC T* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443010.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
Refseq | XP_006478716.1 | 0.0 | protein FAR1-RELATED SEQUENCE 6 | ||||
TrEMBL | A0A067DXF7 | 0.0 | A0A067DXF7_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5QLZ5 | 0.0 | A0A2H5QLZ5_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TX02 | 0.0 | V4TX02_9ROSI; Uncharacterized protein | ||||
STRING | XP_006478716.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006443010.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM7302 | 25 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 1e-102 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g025532m |
Entrez Gene | 102624315 |