PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g025430m
Common NameCISIN_1g024563mg, LOC102622297
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family Trihelix
Protein Properties Length: 254aa    MW: 28737.5 Da    PI: 9.6628
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g025430mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix44.34.6e-1424107186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergf..erspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        +W++  + +Liea  ++  rl+rg l++++W+ev++ +  re g+  +++ +qCk++++ l+k+yk +k+          s++p++ +l+
  orange1.1g025430m  24 CWSEGATGTLIEAWGDRYVRLNRGHLRQKDWKEVAESVnsRENGVkpKKTDIQCKNRIDTLKKKYKIEKAKPPP------SKWPFYYRLD 107
                        7*************************************998889876789*****************9998886......5799999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-2622109No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MELRGSHNVR GTHAATTGGG REDCWSEGAT GTLIEAWGDR YVRLNRGHLR QKDWKEVAES  60
VNSRENGVKP KKTDIQCKNR IDTLKKKYKI EKAKPPPSKW PFYYRLDSLI GNDAVSSKKP  120
ANITLRVKSK PRTSFVGRSV STENDNLSSD GEADDDGDDD EIVVKKVHRM EDVDLSDGAA  180
CRELARAILK FGEIYERIES AKQKQMMELE KERLEFIKDV ECERMNMFMG AQLEIQKSKR  240
KQRPASSGKK SQS*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00488DAPTransfer from AT5G05550Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486290.10.0trihelix transcription factor ASIL2 isoform X2
RefseqXP_024042462.10.0trihelix transcription factor ASIL2 isoform X2
SwissprotQ9LJG82e-34ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A067G0B90.0A0A067G0B9_CITSI; Uncharacterized protein
STRINGXP_006486290.10.0(Citrus sinensis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G05550.16e-71sequence-specific DNA binding transcription factors