PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g025175m | ||||||||
Common Name | CISIN_1g020831mg, LOC102626219 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | WRKY | ||||||||
Protein Properties | Length: 257aa MW: 28380.9 Da PI: 9.1506 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 97.6 | 8.2e-31 | 91 | 150 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ ++++ pr+Y++C++a +Cpvkkkv+rsaedp++++ tYegeHnh+ orange1.1g025175m 91 VKDGYQWRKYGQKVTRDNPSPRAYFKCSFApSCPVKKKVQRSAEDPSILVATYEGEHNHP 150 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 4.0E-30 | 85 | 152 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 27.669 | 86 | 152 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-26 | 89 | 152 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.1E-35 | 91 | 151 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.6E-25 | 92 | 150 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0002238 | Biological Process | response to molecule of fungal origin | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009623 | Biological Process | response to parasitic fungus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MLSILCKNYN NLRQQYMDLM NKNTENEVGI SKKRKAESED HCHTIGFNVH ATESSTSTDE 60 ESCKRPKDNN TKAKVSRFYV RASDSNSTLI VKDGYQWRKY GQKVTRDNPS PRAYFKCSFA 120 PSCPVKKKVQ RSAEDPSILV ATYEGEHNHP QPTDSKAELS LSPSHVATIG NPIHVSAASS 180 MLSASPTATL DMIQPGFLFD DAKKSSVQQI EAPAIHQILV QQMASNLTKD PNFTAALAAA 240 ISGRFADQAR TQRWSL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 8e-21 | 90 | 152 | 13 | 74 | WRKY transcription factor 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.3173 | 0.0 | fruit| leaf |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006450293.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Refseq | XP_006483469.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 1e-77 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A067FJB3 | 0.0 | A0A067FJB3_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A067FW74 | 0.0 | A0A067FW74_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5NW28 | 0.0 | A0A2H5NW28_CITUN; Uncharacterized protein | ||||
TrEMBL | V4TSJ2 | 0.0 | V4TSJ2_9ROSI; Uncharacterized protein | ||||
STRING | XP_006483469.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006450293.1 | 0.0 | (Citrus clementina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 2e-76 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g025175m |
Entrez Gene | 102626219 |