PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g025097m
Common NameCISIN_1g025097mg, LOC102627570
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 259aa    MW: 28812.4 Da    PI: 8.8945
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g025097mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY90.11.8e-2898158159
                        ---SS-EEEEEEE--TT-SS-EEEEEE-ST..T---EEEEEE-SSSTTEEEEEEES--SS- CS
               WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa..gCpvkkkversaedpkvveitYegeHnhe 59 
                        ++Dg++WrKYGqK+ k+++ pr+Y+rC++a  gCpvkkkv+r+ ed+++++ tYegeHnh+
  orange1.1g025097m  98 VKDGHQWRKYGQKVTKDNPSPRAYFRCSMAssGCPVKKKVQRCMEDKSFLVATYEGEHNHD 158
                        58**************************9999****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.0E-2890159IPR003657WRKY domain
PROSITE profilePS5081126.79693160IPR003657WRKY domain
SuperFamilySSF1182904.84E-2596159IPR003657WRKY domain
SMARTSM007749.4E-3298159IPR003657WRKY domain
PfamPF031066.3E-2499158IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MDSHNSPKEK MKLLQAKLEH VRKQNENLRH LVKAMNNQCN DLLARIHEAN RTYSSSDHHH  60
FNNNINIGGV TAQVPPVPNA KQSRIFVKAD SKDSSLIVKD GHQWRKYGQK VTKDNPSPRA  120
YFRCSMASSG CPVKKKVQRC MEDKSFLVAT YEGEHNHDVQ CSSLGQSSSL TNYCSPKSSI  180
VHCPDYQTTD SFGSDVTLDL TLSGSNQETR PPRNLMQVCD DKKKIEEYVA SLTKDPSFTI  240
AVADAVASSI NGPPHRPM*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A3e-20971591373WRKY transcription factor 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ8199550.0KJ819955.1 Citrus japonica WRKY40 (WRKY40) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006483475.10.0WRKY transcription factor WRKY76
TrEMBLA0A067FJ680.0A0A067FJ68_CITSI; Uncharacterized protein
STRINGXP_006483475.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM156101014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G80840.14e-39WRKY DNA-binding protein 40