PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g024825m
Common NameCISIN_1g019737mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 263aa    MW: 29619.8 Da    PI: 5.585
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g024825mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.43.5e-2948107258
                        --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                        +Dgy+WrKYGqK++ g+++prsYYrCt++   +C+++k+v+rs+edp+++e+tY+g+H++
  orange1.1g024825m  48 EDGYSWRKYGQKDILGAKYPRSYYRCTYRntqNCWATKQVQRSDEDPSTFEVTYRGTHTC 107
                        7***************************98899*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.95342105IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.3E-2843107IPR003657WRKY domain
SuperFamilySSF1182907.85E-2646107IPR003657WRKY domain
SMARTSM007741.6E-3847109IPR003657WRKY domain
PfamPF031064.2E-2748107IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MNIYLPCMFL QVIFMLTVTA KLGCRKTLPR RTDKVKVSFE SGLEGPFEDG YSWRKYGQKD  60
ILGAKYPRSY YRCTYRNTQN CWATKQVQRS DEDPSTFEVT YRGTHTCFNG SQSVPQPASP  120
EKHEHKLNHH SDNHQKGSGI NNEYLDNKEI ASPFSFPTSS LGCMKSNDYC FSSLMLDENN  180
FLGGFSSSFI PPAAAESNFY YISQNQMNFG DVHNLQQSES ELPELQSANN SVANSPILNL  240
DFSIDAAELD SNFPFDNAGF SF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A4e-2047107868OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.53890.0fruit| root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006439376.11e-179probable WRKY transcription factor 53
TrEMBLA0A067GM210.0A0A067GM21_CITSI; Uncharacterized protein
STRINGXP_006439376.11e-178(Citrus clementina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.22e-49WRKY family protein