PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g024763m
Common NameCISIN_1g024763mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 264aa    MW: 29150 Da    PI: 7.1114
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g024763mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.10.0002993115123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ++C++C k F ++  L  H++ H
  orange1.1g024763m  93 FECQYCFKEFANSQALGGHQNAH 115
                        89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.7E-490119IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576675.78E-690120No hitNo description
PROSITE profilePS5015711.40693120IPR007087Zinc finger, C2H2
PROSITE patternPS00028095115IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MEKEMTTVFS HTSDGENASS AGSCVEKKLR LFGFELNPCN NNNTNDETCR LKGSAEGDES  60
VNSSNTASSG SEKPSSSRDK SSPPTGESDY KKFECQYCFK EFANSQALGG HQNAHKKERM  120
KKKRLQLQAR KASLNSYLQP YQNMYNLSFN NTYHGSNTAS TWFYDPSCYP CDNQFTLYEE  180
SQISFNPYDQ DPHASKWCST ATIPTQTPFH QQGSTPSMFT RTDRSGDHTP ALIIKPSPLS  240
AAASKQSCKS LDLQLGLSLE SGV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006483768.10.0zinc finger protein 5
TrEMBLA0A067GSK30.0A0A067GSK3_CITSI; Uncharacterized protein
STRINGXP_006483768.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM73252541
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10480.16e-16zinc finger protein 5