PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g024499m
Common NameCISIN_1g024499mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 268aa    MW: 28417.2 Da    PI: 8.1524
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g024499mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.60.0002100122123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ykC+ C+k Fs+   L  H  +H
  orange1.1g024499m 100 YKCSVCNKAFSSYQALGGHKASH 122
                        9***********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0067100122IPR015880Zinc finger, C2H2-like
SuperFamilySSF576672.72E-10100122No hitNo description
PfamPF139123.9E-13100124IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.658100127IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.604.5E-4100122IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280102122IPR007087Zinc finger, C2H2
SuperFamilySSF576672.72E-10153180No hitNo description
PfamPF139122.2E-13157182IPR007087Zinc finger, C2H2
PROSITE profilePS501579.411158180IPR007087Zinc finger, C2H2
SMARTSM003550.19158180IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280160180IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MALEALNSPT TNTHNHHPFR YEDSWTKRRR SKRPRTDESP PLPPAVAAPT EEEYMALCLI  60
MLARGTTTAN TAPAERTPSL APEQRPQDQF PEPPSLKLSY KCSVCNKAFS SYQALGGHKA  120
SHRKNAADAS ASPNAAAASD VTPPPSATAS SGSGGRTHEC SICHKSFPTG QALGGHKRCH  180
YEGGINNNNN NSSSNNNKSN NNSDVVTSGS ASVGASAVTF SEGGGSSSQR GFDLNLPALP  240
EFWSQEVESP LPAKKPKLLM HYSSLED*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.47090.0flower| fruit| leaf| root| vegetative meristem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422839.10.0zinc finger protein ZAT10
TrEMBLA0A067ERY20.0A0A067ERY2_CITSI; Uncharacterized protein
TrEMBLV4U9Y10.0V4U9Y1_9ROSI; Uncharacterized protein
STRINGXP_006422839.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G27730.11e-44salt tolerance zinc finger