PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g024365m
Common NameCISIN_1g024365mg, LOC102628933
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bZIP
Protein Properties Length: 269aa    MW: 29213.5 Da    PI: 6.5006
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g024365mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_129.12.1e-0986133451
                        XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkelee 51 
                         k  +r   NReA r++R++Kka+++ Le++v  L a N++L k+l+ 
  orange1.1g024365m  86 KKTKKRPLGNREAVRKYREKKKARTASLEDEVVRLRAVNQQLLKRLQG 133
                        566778899**********************************99974 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1701.9E-1481151No hitNo description
SMARTSM003381.8E-1183150IPR004827Basic-leucine zipper domain
PfamPF077161.1E-1484140IPR004827Basic-leucine zipper domain
PROSITE profilePS502179.10585132IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.84E-787133No hitNo description
CDDcd146861.81E-1288142No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0071294Biological Processcellular response to zinc ion
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 269 aa     Download sequence    Send to blast
MDDGEVDFSN QEMLSANIGD FPSCSMDSFF EDILKDTHAC THTHTCNPPG PDSSHTHTCF  60
HVHTKIVAPT SEDKVSTDDT AESTEKKTKK RPLGNREAVR KYREKKKART ASLEDEVVRL  120
RAVNQQLLKR LQGQAALEAE VARLKCLLVD IRGRIEGEIG SFPYQKSVNN MNLPNPHSAG  180
AYVVNPCNMR CDDQVYCLHP GMEDKSGEGI ELNGQGFSGC EFENLQCVGN QSSGVRELPG  240
CGDGNVATNT HSSATKNRKG GTRAATAG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.39330.0callus| fruit| stem
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the response to zinc ion deficiency. Binds to the consensus sequence 5'-[AG]TGTCGACA[CT]-3' also called zinc deficiency response element (ZDRE). The ZDRE sequence is conserved in the plant kingdom and present in the promoters of genes that constitute the primary response to zinc deficiency, comprising additional ZIP metal transporter genes (PubMed:20479230, PubMed:26306426). Required for zinc accumulation in roots. Mediates the expression of the zinc transporter ZIP12 during growth in zinc-deficient conditions. ZIP12 transporter is involved in zinc uptake in roots (PubMed:26306426). {ECO:0000269|PubMed:20479230, ECO:0000269|PubMed:26306426}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by zinc deficiency. {ECO:0000269|PubMed:20479230}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422598.10.0basic leucine zipper 23
RefseqXP_006486739.10.0basic leucine zipper 23
RefseqXP_006486740.10.0basic leucine zipper 23
RefseqXP_006486741.10.0basic leucine zipper 23
RefseqXP_024034524.10.0basic leucine zipper 23
RefseqXP_024034525.10.0basic leucine zipper 23
RefseqXP_024958012.10.0basic leucine zipper 23
SwissprotQ8GTS21e-112BZP23_ARATH; Basic leucine zipper 23
TrEMBLA0A067FPJ90.0A0A067FPJ9_CITSI; Uncharacterized protein
TrEMBLV4SAH70.0V4SAH7_9ROSI; Uncharacterized protein
TrEMBLV4SFQ80.0V4SFQ8_9ROSI; Uncharacterized protein
STRINGXP_006486739.10.0(Citrus sinensis)
STRINGXP_006422601.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20362879
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16770.11e-115bZIP family protein
Publications ? help Back to Top
  1. Azevedo H, et al.
    Transcriptomic profiling of Arabidopsis gene expression in response to varying micronutrient zinc supply.
    Genom Data, 2016. 7: p. 256-8
    [PMID:26981422]
  2. Castro PH, et al.
    Phylogenetic analysis of F-bZIP transcription factors indicates conservation of the zinc deficiency response across land plants.
    Sci Rep, 2017. 7(1): p. 3806
    [PMID:28630437]
  3. Nazri AZ,Griffin JHC,Peaston KA,Alexander-Webber DGA,Williams LE
    F-group bZIPs in barley-a role in Zn deficiency.
    Plant Cell Environ., 2017. 40(11): p. 2754-2770
    [PMID:28763829]
  4. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]