PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g023427m
Common NameCISIN_1g023427mg, LOC102628764
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 283aa    MW: 32281.9 Da    PI: 7.2532
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g023427mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM150.58.3e-4781343128
                NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                        pGfrFhPt++el+++yL++ v gkk ++ ++i  ++iy+++Pw+Lp   k +e+ewyfF++rd+k+ +g r+nr+t++g+Wkatg+d++++s
  orange1.1g023427m   8 PGFRFHPTEDELLNFYLRNIVFGKKSHF-DIIGFLNIYHHDPWELPGLSKIGEREWYFFVPRDRKHGSGGRPNRTTEHGFWKATGSDRKIVS 98 
                        9************************988.99***************8778899*************************************99 PP

                NAM  95 k..kgelvglkktLvfykgrapkgektdWvmheyrl 128
                            ++++gl+ktLvfy+grapkg+ktdWvm+eyrl
  orange1.1g023427m  99 LsdPKRVIGLRKTLVFYEGRAPKGHKTDWVMNEYRL 134
                        7667788***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.2476152IPR003441NAC domain
SuperFamilySSF1019416.67E-567152IPR003441NAC domain
PfamPF023651.6E-248134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009965Biological Processleaf morphogenesis
GO:0010200Biological Processresponse to chitin
GO:0045792Biological Processnegative regulation of cell size
GO:0048281Biological Processinflorescence morphogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MTPELELPGF RFHPTEDELL NFYLRNIVFG KKSHFDIIGF LNIYHHDPWE LPGLSKIGER  60
EWYFFVPRDR KHGSGGRPNR TTEHGFWKAT GSDRKIVSLS DPKRVIGLRK TLVFYEGRAP  120
KGHKTDWVMN EYRLPDGCPL PKDIVLCKIY RKATSLKVLE QRAAMEEDQM KTSFTSPSPP  180
SPTLDTSSFC GQPEELLGPI SLPHVMLKQE EQEVSMVQGT YTEEKTVSTA TSLQLPQGKI  240
NLPELQVPKM NTDWSQDPIW SQLSPWLQNI AQNLTPYASI LN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A7e-44815522171NAC domain-containing protein 19
3swm_B7e-44815522171NAC domain-containing protein 19
3swm_C7e-44815522171NAC domain-containing protein 19
3swm_D7e-44815522171NAC domain-containing protein 19
3swp_A7e-44815522171NAC domain-containing protein 19
3swp_B7e-44815522171NAC domain-containing protein 19
3swp_C7e-44815522171NAC domain-containing protein 19
3swp_D7e-44815522171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.111850.0flower| fruit
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds sequence-specific DNA motifs. Involved in stress response. Plays a positive role in drought and salt stress tolerance through the modulation of abscisic acid-mediated signaling. {ECO:0000269|PubMed:26834774}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress, salt stress and abscisic acid (ABA). {ECO:0000269|PubMed:26834774}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006422477.10.0NAC domain-containing protein 22
RefseqXP_006486646.10.0NAC domain-containing protein 22
SwissprotQ10S654e-99NAC22_ORYSJ; NAC domain-containing protein 22
TrEMBLA0A067FXU80.0A0A067FXU8_CITSI; Uncharacterized protein
TrEMBLV4S5S10.0V4S5S1_9ROSI; Uncharacterized protein
STRINGXP_006486646.10.0(Citrus sinensis)
STRINGXP_006422477.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM38992860
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17040.11e-117NAC domain containing protein 36
Publications ? help Back to Top
  1. Hong Y,Zhang H,Huang L,Li D,Song F
    Overexpression of a Stress-Responsive NAC Transcription Factor Gene ONAC022 Improves Drought and Salt Tolerance in Rice.
    Front Plant Sci, 2016. 7: p. 4
    [PMID:26834774]