PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g023347m
Common NameCISIN_1g023366mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 284aa    MW: 32359.8 Da    PI: 8.6701
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g023347mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H218.84.5e-064265123
                       EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2  1 ykCpdCgksFsrksnLkrHirt.H 23
                       y+C+ Cg++F +++ L++H +  H
  orange1.1g023347m 42 YVCGVCGRRFYSNEKLVNHFKQiH 65
                       9******************98766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.17E-54069No hitNo description
Gene3DG3DSA:3.30.160.605.7E-54168IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.1544270IPR007087Zinc finger, C2H2
SMARTSM003550.0074265IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804465IPR007087Zinc finger, C2H2
CDDcd061671.27E-1559201No hitNo description
PfamPF019363.3E-9114194IPR021139NYN domain, limkain-b1-type
Gene3DG3DSA:3.40.50.10107.8E-8115182IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MVAYANSHAF SYVPQVVREQ REERKLFNQL ENRGVIKPAE PYVCGVCGRR FYSNEKLVNH  60
FKQIHEREQK KRLNQIESAR GKRRVHLVGK YSMKMEKYKR AARAILTPKI GYGLADELKR  120
AGFWVRTVSD KPQAADVALR NHMVDMMDKR HVECLVIVSD DSDFVDVLQE AKYRCLKTVV  180
VGDINDGALK RIADASFSWR DILMGKAKKE AVSVVGKWED RDILKRLEWT YSPEVEKKAH  240
GWADGNKDAD IDDATGANNA DCIPKEDNGA WWELESSDAE AIS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024954296.10.0uncharacterized protein LOC102628830
RefseqXP_024954297.10.0uncharacterized protein LOC102628830
TrEMBLA0A067FCB90.0A0A067FCB9_CITSI; Uncharacterized protein
STRINGXP_006477271.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM114442833
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12240.11e-123C2H2 family protein