PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g023197m
Common NameCISIN_1g023197mg, LOC102608057
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 287aa    MW: 33067 Da    PI: 6.948
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g023197mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.81.3e-5491341128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 
                        lppGfrFhPtdeel+v+yL+++++++++++ ++i+evdiyk++Pw+Lp+k++ +ekewyfFs+rd+ky++g+r+nrat sgyWkatg+dk++
  orange1.1g023197m   9 LPPGFRFHPTDEELIVHYLRNQATSRPCPV-SIIPEVDIYKFDPWQLPEKAEFGEKEWYFFSPRDRKYPNGTRPNRATVSGYWKATGTDKAI 99 
                        79****************************.89***************99999*************************************** PP

                NAM  93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                        +  +++  g+kk Lvfykgr pkg ktdW+mheyrl
  orange1.1g023197m 100 YG-GSKYLGVKKALVFYKGRPPKGIKTDWIMHEYRL 134
                        **.999****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019417.72E-674161IPR003441NAC domain
PROSITE profilePS5100561.6739161IPR003441NAC domain
PfamPF023656.2E-2710134IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009825Biological Processmultidimensional cell growth
GO:0009835Biological Processfruit ripening
GO:0009908Biological Processflower development
GO:0010150Biological Processleaf senescence
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MEAQASTELP PGFRFHPTDE ELIVHYLRNQ ATSRPCPVSI IPEVDIYKFD PWQLPEKAEF  60
GEKEWYFFSP RDRKYPNGTR PNRATVSGYW KATGTDKAIY GGSKYLGVKK ALVFYKGRPP  120
KGIKTDWIMH EYRLNDPTRQ PYKHNGSMKL DDWVLCRIYK KRQTGSRSVL DAKVEEDQSC  180
VDQLGKTGGY VEHANASDEQ KLMVKFPRTC SLAHLVELEY FAPISQLLND NTYNFNYDFQ  240
NGINNNAASD DQFENKLQPS DMHQVNHSDS LNQQSLFVNP TVYEFQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-73916717171NO APICAL MERISTEM PROTEIN
1ut4_B1e-73916717171NO APICAL MERISTEM PROTEIN
1ut7_A1e-73916717171NO APICAL MERISTEM PROTEIN
1ut7_B1e-73916717171NO APICAL MERISTEM PROTEIN
3swm_A9e-74916720174NAC domain-containing protein 19
3swm_B9e-74916720174NAC domain-containing protein 19
3swm_C9e-74916720174NAC domain-containing protein 19
3swm_D9e-74916720174NAC domain-containing protein 19
3swp_A9e-74916720174NAC domain-containing protein 19
3swp_B9e-74916720174NAC domain-containing protein 19
3swp_C9e-74916720174NAC domain-containing protein 19
3swp_D9e-74916720174NAC domain-containing protein 19
4dul_A1e-73916717171NAC domain-containing protein 19
4dul_B1e-73916717171NAC domain-containing protein 19
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.40670.0flower| fruit| vegetative meristem
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, stem, flowers, and leaves. {ECO:0000269|PubMed:29760199}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00221DAPTransfer from AT1G69490Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1854190.0EF185419.1 Citrus sinensis NAC domain protein (NAC) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438726.10.0NAC transcription factor 29
RefseqXP_015387126.10.0NAC transcription factor 29 isoform X1
SwissprotK4BWV21e-120NAP1_SOLLC; NAC domain-containing protein 1
TrEMBLA0A067GTM10.0A0A067GTM1_CITSI; Uncharacterized protein
TrEMBLV4TQ330.0V4TQ33_9ROSI; Uncharacterized protein
STRINGXP_006438726.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77072641
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.11e-115NAC-like, activated by AP3/PI
Publications ? help Back to Top
  1. Tomato Genome Consortium
    The tomato genome sequence provides insights into fleshy fruit evolution.
    Nature, 2012. 485(7400): p. 635-41
    [PMID:22660326]
  2. Ma X, et al.
    The NAC Transcription Factor SlNAP2 Regulates Leaf Senescence and Fruit Yield in Tomato.
    Plant Physiol., 2018. 177(3): p. 1286-1302
    [PMID:29760199]