PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g023176m | ||||||||
Common Name | CISIN_1g015861mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C3H | ||||||||
Protein Properties | Length: 287aa MW: 32216.6 Da PI: 8.1805 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.3 | 2e-06 | 3 | 26 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 k++lC+ffa G C G+ C F+H+ orange1.1g023176m 3 KRVLCKFFAH-GACLKGEHCEFSHD 26 99****6666.*************5 PP | |||||||
2 | zf-CCCH | 25.7 | 2e-08 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C ++++ G+C+yG+rC++ H+ orange1.1g023176m 34 ICTYYQK-GFCSYGSRCRYEHV 54 7******.***********997 PP | |||||||
3 | zf-CCCH | 19.9 | 1.3e-06 | 131 | 153 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C+ fa+ G C++G++C+ +Hg orange1.1g023176m 131 RSICS-FAAAGNCPRGEKCPHIHG 153 67899.**************9998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 14.671 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-5 | 1 | 27 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.75E-7 | 3 | 26 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 5.5E-4 | 3 | 28 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 15.77 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 2.4E-4 | 30 | 55 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.57E-5 | 32 | 53 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 8.8E-6 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.0E-5 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 13.178 | 128 | 155 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 0.0021 | 129 | 154 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 4.5E-4 | 133 | 154 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF57850 | 1.38E-13 | 186 | 261 | No hit | No description |
Gene3D | G3DSA:3.30.40.10 | 5.9E-10 | 192 | 256 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
CDD | cd00162 | 0.00533 | 196 | 256 | No hit | No description |
PROSITE profile | PS50089 | 12.238 | 197 | 255 | IPR001841 | Zinc finger, RING-type |
SMART | SM00184 | 3.2E-7 | 197 | 254 | IPR001841 | Zinc finger, RING-type |
Pfam | PF00097 | 2.9E-7 | 197 | 254 | IPR018957 | Zinc finger, C3HC4 RING-type |
PROSITE pattern | PS00518 | 0 | 221 | 230 | IPR017907 | Zinc finger, RING-type, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MSKRVLCKFF AHGACLKGEH CEFSHDWKDP PNNICTYYQK GFCSYGSRCR YEHVKPSRSE 60 SAASSSSSVS HPSRATSSGI TKVPGVMPEL SALSRPFLPP NKTAWNPESV CNDSLENDEV 120 DEPRNLKPAD RSICSFAAAG NCPRGEKCPH IHGDTCPTCG KQCLHPFRPE EREEHMKSCE 180 KKQKHLEALR RSQEIECSVC LDRVLSKPTA AERKFGLLSE CDHPFCISCI RNWRSSSPTS 240 GMDVNTALRA CPICRKLSYF VIPSVIWYYT PEEKQEIIDS YKSKLK* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.11663 | 0.0 | callus |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015387312.1 | 0.0 | putative RING-type E3 ubiquitin transferase C3H69 isoform X6 | ||||
Refseq | XP_015387313.1 | 0.0 | putative RING-type E3 ubiquitin transferase C3H69 isoform X6 | ||||
Refseq | XP_024956809.1 | 0.0 | putative RING-type E3 ubiquitin transferase C3H69 isoform X7 | ||||
Swissprot | E0X9N4 | 1e-137 | C3H69_ARATH; Putative RING-type E3 ubiquitin transferase C3H69 | ||||
TrEMBL | A0A067GUT2 | 0.0 | A0A067GUT2_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A067H735 | 0.0 | A0A067H735_CITSI; Uncharacterized protein | ||||
STRING | XP_006482894.1 | 0.0 | (Citrus sinensis) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G08505.2 | 1e-124 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g023176m |
Publications ? help Back to Top | |||
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