PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g023000m | ||||||||
Common Name | CISIN_1g023000mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 290aa MW: 31898.3 Da PI: 8.2726 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.4 | 0.001 | 225 | 246 | 3 | 23 |
ETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 3 CpdCgksFsrksnLkrHirt.H 23 Cp Cg +Fs+ +L H + H orange1.1g023000m 225 CPQCGARFSSVTTLIEHVEKiH 246 *****************99888 PP | |||||||
2 | zf-C2H2 | 13.8 | 0.00018 | 261 | 283 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C++ F ++ L+ H + H orange1.1g023000m 261 VCPKCSQGFCDPVALVEHVERdH 283 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 1.18E-11 | 6 | 52 | No hit | No description |
PROSITE profile | PS51039 | 7.739 | 10 | 59 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 5.5E-10 | 10 | 51 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 1.8E-13 | 13 | 51 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.0078 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
PROSITE pattern | PS00028 | 0 | 60 | 82 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:4.10.1110.10 | 7.9E-11 | 90 | 145 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 1.86E-8 | 93 | 143 | No hit | No description |
PROSITE profile | PS51039 | 7.97 | 98 | 146 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 2.8E-8 | 101 | 141 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.037 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
PROSITE profile | PS50157 | 9.058 | 223 | 251 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.12 | 223 | 246 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 225 | 246 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 8.8 | 260 | 283 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 262 | 283 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 290 aa Download sequence Send to blast |
MGTPQFPDLG KHCSLPDCKQ IDFLPFTCDC CHKVFCLDHR SYNQHQCPKA ERHDVTVVIC 60 PLCAKGVRLR PDENPHITWE NHVNVDCDPS NYDKVTKKRK CPVRGCKEIL VFSNTIKCRD 120 CTVDHCLKHR FAPDHSCPGP KKLDTGFAFM SLLNRSRKEE PKPKQSPATS STKWTSSFLN 180 AASSFRASAE AGMSKLSNEI SQKLQIAKDG AGQSSSSGTG GTELCPQCGA RFSSVTTLIE 240 HVEKIHDRSG NQARPKVTVD VCPKCSQGFC DPVALVEHVE RDHGGTSRA* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.17396 | 0.0 | fruit |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00306 | DAP | Transfer from AT2G41835 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006421415.1 | 0.0 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
Swissprot | Q8VZ42 | 1e-125 | SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
TrEMBL | A0A067EEW8 | 0.0 | A0A067EEW8_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5P1F5 | 0.0 | A0A2H5P1F5_CITUN; Uncharacterized protein | ||||
TrEMBL | V4S761 | 0.0 | V4S761_9ROSI; Uncharacterized protein | ||||
STRING | XP_006421415.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3908 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 1e-125 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g023000m |