PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g022713m
Common NameCISIN_1g022713mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 294aa    MW: 32281.5 Da    PI: 8.1478
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g022713mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.88.7e-19148202256
                        T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        rk+ ++tkeq   Lee F+++++++ ++++ LA++l+L  rqV vWFqNrRa+ k
  orange1.1g022713m 148 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTK 202
                        788899***********************************************98 PP
2HD-ZIP_I/II125.52.4e-40148237191
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                        +kk+rl+keq++lLEesF+++++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lk+++++l++en+rL+ke +eL+ +l
  orange1.1g022713m 148 RKKLRLTKEQSALLEESFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLHKELQELK-AL 237
                        69*************************************************************************************9.55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007117.459144204IPR001356Homeobox domain
SuperFamilySSF466891.63E-18146212IPR009057Homeodomain-like
SMARTSM003891.0E-15146208IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.1E-17148202IPR009057Homeodomain-like
CDDcd000861.14E-17148205No hitNo description
PfamPF000463.3E-16148202IPR001356Homeobox domain
PROSITE patternPS000270179202IPR017970Homeobox, conserved site
PfamPF021834.2E-10204238IPR003106Leucine zipper, homeobox-associated
SMARTSM003401.7E-25204247IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009735Biological Processresponse to cytokinin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGFDDGCNTG LVLGLGFASA IETTPTNKAN NINIVNHQQL QLPKGTCFEP SLSLGLPGEI  60
YPEAATATTK KNSNSIDVNK GYEESAAAGV AEYQILNRQA SPHSAVSNSF SSGRVVKRER  120
DLSSEEIEVE KVISSRASDE DEDGVNARKK LRLTKEQSAL LEESFKQHST LNPKQKQALA  180
RQLNLRPRQV EVWFQNRRAR TKLKQTEVDC EFLKKCCETL TDENRRLHKE LQELKALKLA  240
QPLYMHMPAA TLTMCPSCER IGGGIADGNS KGPFPMGTKP HCYSPFTNPS AAC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1196204RRARTKLKQ
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.820.0flower| fruit| leaf
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00477DAPTransfer from AT4G37790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006426160.10.0homeobox-leucine zipper protein HAT22
SwissprotP466041e-101HAT22_ARATH; Homeobox-leucine zipper protein HAT22
TrEMBLA0A067GGG60.0A0A067GGG6_CITSI; Uncharacterized protein
TrEMBLV4SKM00.0V4SKM0_9ROSI; Uncharacterized protein
STRINGXP_006426160.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16712886
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37790.12e-89HD-ZIP family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Liu T,Longhurst AD,Talavera-Rauh F,Hokin SA,Barton MK
    The Arabidopsis transcription factor ABIG1 relays ABA signaled growth inhibition and drought induced senescence.
    Elife, 2017.
    [PMID:27697148]
  3. Song L, et al.
    A transcription factor hierarchy defines an environmental stress response network.
    Science, 2017.
    [PMID:27811239]