PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g022711m
Common NameCISIN_1g022711mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 294aa    MW: 33485.5 Da    PI: 8.652
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g022711mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM87.91.9e-27181691128
                NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevdiykvePwdLpk......kvkaeekewyfFskrdkkyatgkrknratks 80 
                        lppG+rFhP++++l+++yL++k ++++      +  ++ ike+d+y++eP +Lp+       +++++++wy + + +  +  g  k r+ k+
  orange1.1g022711m  18 LPPGCRFHPSEDQLLCYYLTNKNKSTEeedtnlC-DNDLIKELDLYEHEPYELPEttcyayGYRGRKRHWYCYGRVSVVK--G-SKCRKGKN 105
                        79********************999886666532.3357**************954666543334566777777766554..3.56666789 PP

                NAM  81 gyWkatgkdkevlsk.........kgel........vglkktLvfykg.rapkgektdWvmheyrl 128
                        gyW+  g+ +ev+++         +  +         g+++++vfy g + +++++t+W+mhey+l
  orange1.1g022711m 106 GYWRRRGRVTEVVVRntscnnynnN--NnnkrgklvLGTRTSFVFYLGnSLKTAVRTHWLMHEYAL 169
                        ***********99986776666550..1556677779*********883557788*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.75E-3110185IPR003441NAC domain
PROSITE profilePS5100532.63218185IPR003441NAC domain
PfamPF023652.2E-1719169IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 294 aa     Download sequence    Send to blast
MGDTHRSDGN RKMESFSLPP GCRFHPSEDQ LLCYYLTNKN KSTEEEDTNL CDNDLIKELD  60
LYEHEPYELP ETTCYAYGYR GRKRHWYCYG RVSVVKGSKC RKGKNGYWRR RGRVTEVVVR  120
NTSCNNYNNN NNNKRGKLVL GTRTSFVFYL GNSLKTAVRT HWLMHEYALD DHVKASFVLC  180
RIFVKSRGGN SKSEVSLSSG AGESVSAVRH IGIQHDGFLI PDSSEGKVDD DNSIDRRNDT  240
CIYPVRLVSQ LDGHVTSRPV SDASFQFPAG IPSKEQVIYF KASPVNLYCH FFF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-151518612169Stress-induced transcription factor NAC1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024040257.10.0NAC domain-containing protein 96
TrEMBLA0A067H8Q60.0A0A067H8Q6_CITSI; Uncharacterized protein
STRINGXP_006434730.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17192810
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69490.12e-19NAC-like, activated by AP3/PI